miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27414 3' -58.3 NC_005869.1 + 1699 0.69 0.281452
Target:  5'- gCCUGGuuUGCGGugGAUuugGAGGAgcaUCUCUa -3'
miRNA:   3'- -GGACCu-GCGCCugCUG---CUCCU---GGAGA- -5'
27414 3' -58.3 NC_005869.1 + 17838 0.72 0.200813
Target:  5'- gCCgcgGGACGCGGGgguCGGCGAGGGgCg-- -3'
miRNA:   3'- -GGa--CCUGCGCCU---GCUGCUCCUgGaga -5'
27414 3' -58.3 NC_005869.1 + 9843 0.73 0.153189
Target:  5'- gCUGGAgGCGGAgGACGAGGAg---- -3'
miRNA:   3'- gGACCUgCGCCUgCUGCUCCUggaga -5'
27414 3' -58.3 NC_005869.1 + 11640 0.68 0.368142
Target:  5'- uCCUGGuugGCGCGGAaGAUGGgcuGGACgUCg -3'
miRNA:   3'- -GGACC---UGCGCCUgCUGCU---CCUGgAGa -5'
27414 3' -58.3 NC_005869.1 + 9423 0.68 0.368142
Target:  5'- gUUGG-CGCGGcaGCuGACGGGGAUCUUUu -3'
miRNA:   3'- gGACCuGCGCC--UG-CUGCUCCUGGAGA- -5'
27414 3' -58.3 NC_005869.1 + 20938 0.67 0.376877
Target:  5'- cCCgGGACG-GGACGcGCGAGaGGCCg-- -3'
miRNA:   3'- -GGaCCUGCgCCUGC-UGCUC-CUGGaga -5'
27414 3' -58.3 NC_005869.1 + 25193 0.67 0.384857
Target:  5'- aCCUGGccgccaccguggaGCGCGccGGCcACGGGGACCUg- -3'
miRNA:   3'- -GGACC-------------UGCGC--CUGcUGCUCCUGGAga -5'
27414 3' -58.3 NC_005869.1 + 17296 0.67 0.403905
Target:  5'- aCCUcGGGCGCGG-CGACa---GCCUCUg -3'
miRNA:   3'- -GGA-CCUGCGCCuGCUGcuccUGGAGA- -5'
27414 3' -58.3 NC_005869.1 + 6794 0.66 0.450584
Target:  5'- uUUGGACG-GGGCGugGcgucucggugauaAGGGCCUg- -3'
miRNA:   3'- gGACCUGCgCCUGCugC-------------UCCUGGAga -5'
27414 3' -58.3 NC_005869.1 + 16628 0.66 0.441786
Target:  5'- aCCgGGGCGCGcGGgGugGGGGGCa--- -3'
miRNA:   3'- -GGaCCUGCGC-CUgCugCUCCUGgaga -5'
27414 3' -58.3 NC_005869.1 + 19142 0.66 0.451568
Target:  5'- -gUGGACucugGCGGGCGcAgGAGGAUCUg- -3'
miRNA:   3'- ggACCUG----CGCCUGC-UgCUCCUGGAga -5'
27414 3' -58.3 NC_005869.1 + 28111 1.09 0.000323
Target:  5'- uCCUGGACGCGGACGACGAGGACCUCUg -3'
miRNA:   3'- -GGACCUGCGCCUGCUGCUCCUGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.