miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27415 5' -49.6 NC_005869.1 + 16647 0.66 0.859949
Target:  5'- cGUGGcgccGCAGcucagcGCGGCCgCGGCGCUGGa -3'
miRNA:   3'- -UAUCuu--UGUC------UGUUGGaGUCGCGACU- -5'
27415 5' -49.6 NC_005869.1 + 17281 0.66 0.841304
Target:  5'- -gGGAGGCuGGGCAgcACCUCgGGCGCg-- -3'
miRNA:   3'- uaUCUUUG-UCUGU--UGGAG-UCGCGacu -5'
27415 5' -49.6 NC_005869.1 + 21616 0.67 0.811382
Target:  5'- -cAGGAGCAGcaGCAGCCg-GGUGUUGGg -3'
miRNA:   3'- uaUCUUUGUC--UGUUGGagUCGCGACU- -5'
27415 5' -49.6 NC_005869.1 + 22485 0.67 0.800937
Target:  5'- --uGGAACAGACAcACCUgcacaaAGCGCUcGAu -3'
miRNA:   3'- uauCUUUGUCUGU-UGGAg-----UCGCGA-CU- -5'
27415 5' -49.6 NC_005869.1 + 31077 0.67 0.800937
Target:  5'- uGUAGGAGCAG-CGGCU--GGgGCUGAa -3'
miRNA:   3'- -UAUCUUUGUCuGUUGGagUCgCGACU- -5'
27415 5' -49.6 NC_005869.1 + 11814 0.67 0.779422
Target:  5'- uUGGGAGCAGGCucuGCggcgcaUCauGGCGCUGAc -3'
miRNA:   3'- uAUCUUUGUCUGu--UGg-----AG--UCGCGACU- -5'
27415 5' -49.6 NC_005869.1 + 6673 0.67 0.768381
Target:  5'- -cAGcgGCGGGCGGCCagGGCGCg-- -3'
miRNA:   3'- uaUCuuUGUCUGUUGGagUCGCGacu -5'
27415 5' -49.6 NC_005869.1 + 15465 0.67 0.768381
Target:  5'- gGUGGAGGCGG-UAGCC-CGGCGCc-- -3'
miRNA:   3'- -UAUCUUUGUCuGUUGGaGUCGCGacu -5'
27415 5' -49.6 NC_005869.1 + 11772 0.68 0.757172
Target:  5'- -aGGAGGCAGAagaguCCgcaggCGGCGCUGu -3'
miRNA:   3'- uaUCUUUGUCUguu--GGa----GUCGCGACu -5'
27415 5' -49.6 NC_005869.1 + 11908 0.69 0.687211
Target:  5'- cUGGAGGCGGugGuGCCUCcGCGCa-- -3'
miRNA:   3'- uAUCUUUGUCugU-UGGAGuCGCGacu -5'
27415 5' -49.6 NC_005869.1 + 3763 0.7 0.639092
Target:  5'- -gAGGAGguGGC-GCC-CGGCGCUGGa -3'
miRNA:   3'- uaUCUUUguCUGuUGGaGUCGCGACU- -5'
27415 5' -49.6 NC_005869.1 + 2361 0.7 0.590843
Target:  5'- -gGGAGGCGGugAACCUgccCAGCG-UGAg -3'
miRNA:   3'- uaUCUUUGUCugUUGGA---GUCGCgACU- -5'
27415 5' -49.6 NC_005869.1 + 24336 0.71 0.566922
Target:  5'- cAUGGAcGCGGACGugCUgCAGCGCc-- -3'
miRNA:   3'- -UAUCUuUGUCUGUugGA-GUCGCGacu -5'
27415 5' -49.6 NC_005869.1 + 6118 0.75 0.370803
Target:  5'- gGUGGguACGcuacGACAaaguccggggugACCUCAGCGCUGAg -3'
miRNA:   3'- -UAUCuuUGU----CUGU------------UGGAGUCGCGACU- -5'
27415 5' -49.6 NC_005869.1 + 27885 1.08 0.001984
Target:  5'- cAUAGAAACAGACAACCUCAGCGCUGAg -3'
miRNA:   3'- -UAUCUUUGUCUGUUGGAGUCGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.