miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27416 3' -54 NC_005869.1 + 18559 0.66 0.682818
Target:  5'- cGGCGCcgcgcGCGGCggCG-CCGGGCUAc -3'
miRNA:   3'- cCUGCGaa---UGCUGuaGCaGGUCCGGU- -5'
27416 3' -54 NC_005869.1 + 28114 0.66 0.66807
Target:  5'- uGGACGCggACGACGaggaccUCuGUCuccacacgcucgagCAGGCCu -3'
miRNA:   3'- -CCUGCGaaUGCUGU------AG-CAG--------------GUCCGGu -5'
27416 3' -54 NC_005869.1 + 7647 0.66 0.648696
Target:  5'- aGGGgGUccuCGGgGUCGUCCggcAGGCCGg -3'
miRNA:   3'- -CCUgCGaauGCUgUAGCAGG---UCCGGU- -5'
27416 3' -54 NC_005869.1 + 21486 0.66 0.647555
Target:  5'- uGACGCUggugaucuccuggUACGuGCGcUCGUCCAcaugcaaguuGGCCAg -3'
miRNA:   3'- cCUGCGA-------------AUGC-UGU-AGCAGGU----------CCGGU- -5'
27416 3' -54 NC_005869.1 + 21267 0.66 0.637274
Target:  5'- uGGGCuccaGgUUGCGGCuggccUCGUCCAGGgCGc -3'
miRNA:   3'- -CCUG----CgAAUGCUGu----AGCAGGUCCgGU- -5'
27416 3' -54 NC_005869.1 + 18689 0.66 0.637274
Target:  5'- gGGugGCgccgGCGAUcgCGUugaCCAcgucGGCCAc -3'
miRNA:   3'- -CCugCGaa--UGCUGuaGCA---GGU----CCGGU- -5'
27416 3' -54 NC_005869.1 + 22017 0.67 0.60302
Target:  5'- -aGCGCUgcUGCGcCAUCGUCaacacGGCCGc -3'
miRNA:   3'- ccUGCGA--AUGCuGUAGCAGgu---CCGGU- -5'
27416 3' -54 NC_005869.1 + 6121 0.67 0.591642
Target:  5'- gGGuACGC-UACGACAaaGUCCGGGgUg -3'
miRNA:   3'- -CC-UGCGaAUGCUGUagCAGGUCCgGu -5'
27416 3' -54 NC_005869.1 + 5403 0.69 0.501611
Target:  5'- uGGCGCUuccgagcUGCG-CGUCGUUCAGGUa- -3'
miRNA:   3'- cCUGCGA-------AUGCuGUAGCAGGUCCGgu -5'
27416 3' -54 NC_005869.1 + 26481 0.69 0.501611
Target:  5'- uGGGCcacaacaucucggGCUUcgAUGAgAUCGUCCuGGCCGc -3'
miRNA:   3'- -CCUG-------------CGAA--UGCUgUAGCAGGuCCGGU- -5'
27416 3' -54 NC_005869.1 + 17898 0.69 0.498381
Target:  5'- cGGCGCUggugcccaucaucGCGGCAUCcaUCUGGGCCAu -3'
miRNA:   3'- cCUGCGAa------------UGCUGUAGc-AGGUCCGGU- -5'
27416 3' -54 NC_005869.1 + 16967 0.69 0.481317
Target:  5'- -cGCGCacggagGCGACcgCGguggCCGGGCCGg -3'
miRNA:   3'- ccUGCGaa----UGCUGuaGCa---GGUCCGGU- -5'
27416 3' -54 NC_005869.1 + 7050 0.7 0.439965
Target:  5'- cGGGCGgUgACGACGaCGUCCuGGGCgCAg -3'
miRNA:   3'- -CCUGCgAaUGCUGUaGCAGG-UCCG-GU- -5'
27416 3' -54 NC_005869.1 + 26945 1.1 0.000624
Target:  5'- gGGACGCUUACGACAUCGUCCAGGCCAc -3'
miRNA:   3'- -CCUGCGAAUGCUGUAGCAGGUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.