Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27416 | 5' | -57.9 | NC_005869.1 | + | 17513 | 0.66 | 0.468066 |
Target: 5'- --cGCGCCCccAGaGCGccUCGgCGUCGCCg -3' miRNA: 3'- ugaCGCGGG--UCcUGC--AGCaGCAGUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 21444 | 0.66 | 0.448057 |
Target: 5'- cCUGCaGCCgCGccGCGUCGuccUCGUCGCCc -3' miRNA: 3'- uGACG-CGG-GUccUGCAGC---AGCAGUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 5941 | 0.67 | 0.42853 |
Target: 5'- --cGCGUCCAGGAaGUgGauUgGUCGCCa -3' miRNA: 3'- ugaCGCGGGUCCUgCAgC--AgCAGUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 18422 | 0.67 | 0.381106 |
Target: 5'- gGCUGCGgcgcaccCCCAGGAUGgccggCG-CGgagCGCCu -3' miRNA: 3'- -UGACGC-------GGGUCCUGCa----GCaGCa--GUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 18058 | 0.68 | 0.342273 |
Target: 5'- aGCgGCGCCUGGGGCGcgUGcccagcaccagcaccUCGUCGCUg -3' miRNA: 3'- -UGaCGCGGGUCCUGCa-GC---------------AGCAGUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 12082 | 0.69 | 0.314878 |
Target: 5'- gGCUGU-CCCAGGACGUgCGgcaggUGaUCGCCc -3' miRNA: 3'- -UGACGcGGGUCCUGCA-GCa----GC-AGUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 16630 | 0.69 | 0.29211 |
Target: 5'- gGCcgGC-CCCAGGcCGUCGUgG-CGCCg -3' miRNA: 3'- -UGa-CGcGGGUCCuGCAGCAgCaGUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 24123 | 0.7 | 0.277659 |
Target: 5'- uGCUGCGCCCccugcGGGGCuacgGUCG-CACCc -3' miRNA: 3'- -UGACGCGGG-----UCCUGcag-CAGCaGUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 23414 | 0.71 | 0.231559 |
Target: 5'- --cGCGCCCAGGGCGcCGgccggCGgcuUCAUCu -3' miRNA: 3'- ugaCGCGGGUCCUGCaGCa----GC---AGUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 21282 | 0.72 | 0.202717 |
Target: 5'- gGCUGgccuCGUCCAGGGCGccCGUggcCGUCGCCc -3' miRNA: 3'- -UGAC----GCGGGUCCUGCa-GCA---GCAGUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 24570 | 0.79 | 0.065604 |
Target: 5'- aGCUGCgGCCCcgggAGGGCGgccgCGcCGUCACCg -3' miRNA: 3'- -UGACG-CGGG----UCCUGCa---GCaGCAGUGG- -5' |
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27416 | 5' | -57.9 | NC_005869.1 | + | 26980 | 1.11 | 0.000221 |
Target: 5'- uACUGCGCCCAGGACGUCGUCGUCACCg -3' miRNA: 3'- -UGACGCGGGUCCUGCAGCAGCAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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