miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27416 5' -57.9 NC_005869.1 + 17513 0.66 0.468066
Target:  5'- --cGCGCCCccAGaGCGccUCGgCGUCGCCg -3'
miRNA:   3'- ugaCGCGGG--UCcUGC--AGCaGCAGUGG- -5'
27416 5' -57.9 NC_005869.1 + 21444 0.66 0.448057
Target:  5'- cCUGCaGCCgCGccGCGUCGuccUCGUCGCCc -3'
miRNA:   3'- uGACG-CGG-GUccUGCAGC---AGCAGUGG- -5'
27416 5' -57.9 NC_005869.1 + 5941 0.67 0.42853
Target:  5'- --cGCGUCCAGGAaGUgGauUgGUCGCCa -3'
miRNA:   3'- ugaCGCGGGUCCUgCAgC--AgCAGUGG- -5'
27416 5' -57.9 NC_005869.1 + 18422 0.67 0.381106
Target:  5'- gGCUGCGgcgcaccCCCAGGAUGgccggCG-CGgagCGCCu -3'
miRNA:   3'- -UGACGC-------GGGUCCUGCa----GCaGCa--GUGG- -5'
27416 5' -57.9 NC_005869.1 + 18058 0.68 0.342273
Target:  5'- aGCgGCGCCUGGGGCGcgUGcccagcaccagcaccUCGUCGCUg -3'
miRNA:   3'- -UGaCGCGGGUCCUGCa-GC---------------AGCAGUGG- -5'
27416 5' -57.9 NC_005869.1 + 12082 0.69 0.314878
Target:  5'- gGCUGU-CCCAGGACGUgCGgcaggUGaUCGCCc -3'
miRNA:   3'- -UGACGcGGGUCCUGCA-GCa----GC-AGUGG- -5'
27416 5' -57.9 NC_005869.1 + 16630 0.69 0.29211
Target:  5'- gGCcgGC-CCCAGGcCGUCGUgG-CGCCg -3'
miRNA:   3'- -UGa-CGcGGGUCCuGCAGCAgCaGUGG- -5'
27416 5' -57.9 NC_005869.1 + 24123 0.7 0.277659
Target:  5'- uGCUGCGCCCccugcGGGGCuacgGUCG-CACCc -3'
miRNA:   3'- -UGACGCGGG-----UCCUGcag-CAGCaGUGG- -5'
27416 5' -57.9 NC_005869.1 + 23414 0.71 0.231559
Target:  5'- --cGCGCCCAGGGCGcCGgccggCGgcuUCAUCu -3'
miRNA:   3'- ugaCGCGGGUCCUGCaGCa----GC---AGUGG- -5'
27416 5' -57.9 NC_005869.1 + 21282 0.72 0.202717
Target:  5'- gGCUGgccuCGUCCAGGGCGccCGUggcCGUCGCCc -3'
miRNA:   3'- -UGAC----GCGGGUCCUGCa-GCA---GCAGUGG- -5'
27416 5' -57.9 NC_005869.1 + 24570 0.79 0.065604
Target:  5'- aGCUGCgGCCCcgggAGGGCGgccgCGcCGUCACCg -3'
miRNA:   3'- -UGACG-CGGG----UCCUGCa---GCaGCAGUGG- -5'
27416 5' -57.9 NC_005869.1 + 26980 1.11 0.000221
Target:  5'- uACUGCGCCCAGGACGUCGUCGUCACCg -3'
miRNA:   3'- -UGACGCGGGUCCUGCAGCAGCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.