miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27417 5' -58.2 NC_005869.1 + 16733 0.65 0.443323
Target:  5'- --gGGUCuCGGGAgcggucuggacgccCACCgaggCGCuCCUCAg -3'
miRNA:   3'- guaCCAG-GCCCU--------------GUGGaa--GCG-GGAGU- -5'
27417 5' -58.2 NC_005869.1 + 21419 0.66 0.439369
Target:  5'- -uUGGUCaggaagaaguugaGGGugGCCUgcagccgcgccgcgUCGUCCUCGu -3'
miRNA:   3'- guACCAGg------------CCCugUGGA--------------AGCGGGAGU- -5'
27417 5' -58.2 NC_005869.1 + 33620 0.66 0.426659
Target:  5'- gAUGG-CCGGuGACuCCUcUCGCCC-CGc -3'
miRNA:   3'- gUACCaGGCC-CUGuGGA-AGCGGGaGU- -5'
27417 5' -58.2 NC_005869.1 + 17432 0.67 0.388963
Target:  5'- gGUGGuUCCGGuGGC-CCggCGCCCg-- -3'
miRNA:   3'- gUACC-AGGCC-CUGuGGaaGCGGGagu -5'
27417 5' -58.2 NC_005869.1 + 12969 0.67 0.377191
Target:  5'- --cGGcCCGGGACGCCUUUgacaGCgacgaggagggccgCCUCAu -3'
miRNA:   3'- guaCCaGGCCCUGUGGAAG----CG--------------GGAGU- -5'
27417 5' -58.2 NC_005869.1 + 4582 0.68 0.336673
Target:  5'- cCGUGG-CgGGGACGgugaguuguCCUUCGCCgUUCAg -3'
miRNA:   3'- -GUACCaGgCCCUGU---------GGAAGCGG-GAGU- -5'
27417 5' -58.2 NC_005869.1 + 9523 0.68 0.320419
Target:  5'- --gGGUCCGGGGCGCagguucCGUUCUCc -3'
miRNA:   3'- guaCCAGGCCCUGUGgaa---GCGGGAGu -5'
27417 5' -58.2 NC_005869.1 + 276 0.68 0.297154
Target:  5'- -cUGGaCCGG---ACCUUCGCCCUCc -3'
miRNA:   3'- guACCaGGCCcugUGGAAGCGGGAGu -5'
27417 5' -58.2 NC_005869.1 + 9448 0.7 0.248019
Target:  5'- gCAUGGUCuCGGuGACGgCgcggcCGCCCUCc -3'
miRNA:   3'- -GUACCAG-GCC-CUGUgGaa---GCGGGAGu -5'
27417 5' -58.2 NC_005869.1 + 26582 0.7 0.229106
Target:  5'- --aGGUa--GGACACCUcCGCCCUCGg -3'
miRNA:   3'- guaCCAggcCCUGUGGAaGCGGGAGU- -5'
27417 5' -58.2 NC_005869.1 + 9091 0.7 0.217185
Target:  5'- --aGGUCCucgaGGGGCGUC-UCGCCCUCGu -3'
miRNA:   3'- guaCCAGG----CCCUGUGGaAGCGGGAGU- -5'
27417 5' -58.2 NC_005869.1 + 4742 0.72 0.160777
Target:  5'- uGUGGUCCGGaccGCugCgguagUUGCCCUCGc -3'
miRNA:   3'- gUACCAGGCCc--UGugGa----AGCGGGAGU- -5'
27417 5' -58.2 NC_005869.1 + 12754 0.74 0.132109
Target:  5'- -uUGGUCUGGGcCACCguguaGCCCUCc -3'
miRNA:   3'- guACCAGGCCCuGUGGaag--CGGGAGu -5'
27417 5' -58.2 NC_005869.1 + 26721 1.07 0.000367
Target:  5'- uCAUGGUCCGGGACACCUUCGCCCUCAc -3'
miRNA:   3'- -GUACCAGGCCCUGUGGAAGCGGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.