miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2742 3' -58.4 NC_001491.2 + 148872 0.66 0.84176
Target:  5'- cGuCGGgCUCCggCAGGCAcagcuccgUGGCCCCCa -3'
miRNA:   3'- uCuGCUgGAGG--GUCUGU--------ACUGGGGGc -5'
2742 3' -58.4 NC_001491.2 + 30237 0.66 0.833731
Target:  5'- gGGuCGACUccauUCCCauccaGGACAUGGCCUUCa -3'
miRNA:   3'- -UCuGCUGG----AGGG-----UCUGUACUGGGGGc -5'
2742 3' -58.4 NC_001491.2 + 75729 0.66 0.817153
Target:  5'- aAGugGACUauuugaucguaUUCCAGuaGCAaGACCCCCc -3'
miRNA:   3'- -UCugCUGG-----------AGGGUC--UGUaCUGGGGGc -5'
2742 3' -58.4 NC_001491.2 + 117660 0.66 0.817153
Target:  5'- gGGAUGGCUUCuccgCCGGGCcgGAgCCCUCa -3'
miRNA:   3'- -UCUGCUGGAG----GGUCUGuaCU-GGGGGc -5'
2742 3' -58.4 NC_001491.2 + 77060 0.66 0.80862
Target:  5'- uGGGCGAUUUUCgGGGguUAUGuuGCCCCCGg -3'
miRNA:   3'- -UCUGCUGGAGGgUCU--GUAC--UGGGGGC- -5'
2742 3' -58.4 NC_001491.2 + 49862 0.66 0.80862
Target:  5'- uGuCGGCCgagCCCAGAUAUGugUUCuCGg -3'
miRNA:   3'- uCuGCUGGa--GGGUCUGUACugGGG-GC- -5'
2742 3' -58.4 NC_001491.2 + 113926 0.66 0.799933
Target:  5'- cGGugGGCaCUUCCAGGCuuu-CCCCUa -3'
miRNA:   3'- -UCugCUG-GAGGGUCUGuacuGGGGGc -5'
2742 3' -58.4 NC_001491.2 + 116581 0.67 0.791101
Target:  5'- gGGGCGuccGCCgucCCCGGACugGACCCCa- -3'
miRNA:   3'- -UCUGC---UGGa--GGGUCUGuaCUGGGGgc -5'
2742 3' -58.4 NC_001491.2 + 117294 0.67 0.782132
Target:  5'- uGGGCGACC-CCgAGAUAguccUGGCCgCCu -3'
miRNA:   3'- -UCUGCUGGaGGgUCUGU----ACUGGgGGc -5'
2742 3' -58.4 NC_001491.2 + 115820 0.67 0.754486
Target:  5'- gAGcCGGCggCCCAGGCcgGAgCCUCGg -3'
miRNA:   3'- -UCuGCUGgaGGGUCUGuaCUgGGGGC- -5'
2742 3' -58.4 NC_001491.2 + 146965 0.67 0.745053
Target:  5'- -cACGGCCUCCCccaACAUc-CCCCCGa -3'
miRNA:   3'- ucUGCUGGAGGGuc-UGUAcuGGGGGC- -5'
2742 3' -58.4 NC_001491.2 + 77629 0.69 0.686769
Target:  5'- cAGuCGGCCgcuacCCCAGugGUGcCUCCCa -3'
miRNA:   3'- -UCuGCUGGa----GGGUCugUACuGGGGGc -5'
2742 3' -58.4 NC_001491.2 + 66228 0.69 0.636923
Target:  5'- cGAUGGCCUcgucaaaccCCCAGACAcugucggcggcUGGCgCCCCu -3'
miRNA:   3'- uCUGCUGGA---------GGGUCUGU-----------ACUG-GGGGc -5'
2742 3' -58.4 NC_001491.2 + 146909 0.7 0.626913
Target:  5'- uGACGguccagGCCgaggCCCGGGCccgGGCCCCCu -3'
miRNA:   3'- uCUGC------UGGa---GGGUCUGua-CUGGGGGc -5'
2742 3' -58.4 NC_001491.2 + 118125 0.7 0.60691
Target:  5'- --uCGGCCUcCCCGGGCGgagGGUCCCCGg -3'
miRNA:   3'- ucuGCUGGA-GGGUCUGUa--CUGGGGGC- -5'
2742 3' -58.4 NC_001491.2 + 91049 0.7 0.586978
Target:  5'- -aACG-CCUCgCGGugGUGAgCCCCGg -3'
miRNA:   3'- ucUGCuGGAGgGUCugUACUgGGGGC- -5'
2742 3' -58.4 NC_001491.2 + 28831 0.7 0.577057
Target:  5'- cGAUGACCUCaaGGACGUGGCCaagcucacgCCGg -3'
miRNA:   3'- uCUGCUGGAGggUCUGUACUGGg--------GGC- -5'
2742 3' -58.4 NC_001491.2 + 116905 0.71 0.567172
Target:  5'- cGGCGcGCCUaCgCGGACAUGGCCuaCCCGa -3'
miRNA:   3'- uCUGC-UGGA-GgGUCUGUACUGG--GGGC- -5'
2742 3' -58.4 NC_001491.2 + 115326 0.71 0.518517
Target:  5'- cGAgGACCUgCUGGGCG-GACUCCCGg -3'
miRNA:   3'- uCUgCUGGAgGGUCUGUaCUGGGGGC- -5'
2742 3' -58.4 NC_001491.2 + 283 0.71 0.518517
Target:  5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuaauaaaaaaauCCCa -3'
miRNA:   3'- -UCUGC--UGGAGGGUC---UGUACUGG------------GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.