Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2742 | 3' | -58.4 | NC_001491.2 | + | 317 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 385 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 351 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 419 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 453 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 487 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 141819 | 0.73 | 0.426934 |
Target: 5'- cGGCGACCccggCCCAGcCAUG-CCCCaCGg -3' miRNA: 3'- uCUGCUGGa---GGGUCuGUACuGGGG-GC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 62342 | 0.73 | 0.435669 |
Target: 5'- uGGugG-UCUgCCAGGCucUGGCCCCCGg -3' miRNA: 3'- -UCugCuGGAgGGUCUGu-ACUGGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 283 | 0.71 | 0.518517 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuaauaaaaaaauCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG------------GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 115326 | 0.71 | 0.518517 |
Target: 5'- cGAgGACCUgCUGGGCG-GACUCCCGg -3' miRNA: 3'- uCUgCUGGAgGGUCUGUaCUGGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 116905 | 0.71 | 0.567172 |
Target: 5'- cGGCGcGCCUaCgCGGACAUGGCCuaCCCGa -3' miRNA: 3'- uCUGC-UGGA-GgGUCUGUACUGG--GGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 28831 | 0.7 | 0.577057 |
Target: 5'- cGAUGACCUCaaGGACGUGGCCaagcucacgCCGg -3' miRNA: 3'- uCUGCUGGAGggUCUGUACUGGg--------GGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 91049 | 0.7 | 0.586978 |
Target: 5'- -aACG-CCUCgCGGugGUGAgCCCCGg -3' miRNA: 3'- ucUGCuGGAGgGUCugUACUgGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 118125 | 0.7 | 0.60691 |
Target: 5'- --uCGGCCUcCCCGGGCGgagGGUCCCCGg -3' miRNA: 3'- ucuGCUGGA-GGGUCUGUa--CUGGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 146909 | 0.7 | 0.626913 |
Target: 5'- uGACGguccagGCCgaggCCCGGGCccgGGCCCCCu -3' miRNA: 3'- uCUGC------UGGa---GGGUCUGua-CUGGGGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 66228 | 0.69 | 0.636923 |
Target: 5'- cGAUGGCCUcgucaaaccCCCAGACAcugucggcggcUGGCgCCCCu -3' miRNA: 3'- uCUGCUGGA---------GGGUCUGU-----------ACUG-GGGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 77629 | 0.69 | 0.686769 |
Target: 5'- cAGuCGGCCgcuacCCCAGugGUGcCUCCCa -3' miRNA: 3'- -UCuGCUGGa----GGGUCugUACuGGGGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 146965 | 0.67 | 0.745053 |
Target: 5'- -cACGGCCUCCCccaACAUc-CCCCCGa -3' miRNA: 3'- ucUGCUGGAGGGuc-UGUAcuGGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 115820 | 0.67 | 0.754486 |
Target: 5'- gAGcCGGCggCCCAGGCcgGAgCCUCGg -3' miRNA: 3'- -UCuGCUGgaGGGUCUGuaCUgGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 117294 | 0.67 | 0.782132 |
Target: 5'- uGGGCGACC-CCgAGAUAguccUGGCCgCCu -3' miRNA: 3'- -UCUGCUGGaGGgUCUGU----ACUGGgGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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