Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2742 | 3' | -58.4 | NC_001491.2 | + | 283 | 0.71 | 0.518517 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuaauaaaaaaauCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG------------GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 317 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 351 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 385 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 419 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 453 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 487 | 0.79 | 0.188626 |
Target: 5'- uGGGCGugGCCUCCCAGuggGCGUGGCCuCCCa -3' miRNA: 3'- -UCUGC--UGGAGGGUC---UGUACUGG-GGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 28831 | 0.7 | 0.577057 |
Target: 5'- cGAUGACCUCaaGGACGUGGCCaagcucacgCCGg -3' miRNA: 3'- uCUGCUGGAGggUCUGUACUGGg--------GGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 30237 | 0.66 | 0.833731 |
Target: 5'- gGGuCGACUccauUCCCauccaGGACAUGGCCUUCa -3' miRNA: 3'- -UCuGCUGG----AGGG-----UCUGUACUGGGGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 49862 | 0.66 | 0.80862 |
Target: 5'- uGuCGGCCgagCCCAGAUAUGugUUCuCGg -3' miRNA: 3'- uCuGCUGGa--GGGUCUGUACugGGG-GC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 62342 | 0.73 | 0.435669 |
Target: 5'- uGGugG-UCUgCCAGGCucUGGCCCCCGg -3' miRNA: 3'- -UCugCuGGAgGGUCUGu-ACUGGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 66228 | 0.69 | 0.636923 |
Target: 5'- cGAUGGCCUcgucaaaccCCCAGACAcugucggcggcUGGCgCCCCu -3' miRNA: 3'- uCUGCUGGA---------GGGUCUGU-----------ACUG-GGGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 75729 | 0.66 | 0.817153 |
Target: 5'- aAGugGACUauuugaucguaUUCCAGuaGCAaGACCCCCc -3' miRNA: 3'- -UCugCUGG-----------AGGGUC--UGUaCUGGGGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 77060 | 0.66 | 0.80862 |
Target: 5'- uGGGCGAUUUUCgGGGguUAUGuuGCCCCCGg -3' miRNA: 3'- -UCUGCUGGAGGgUCU--GUAC--UGGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 77629 | 0.69 | 0.686769 |
Target: 5'- cAGuCGGCCgcuacCCCAGugGUGcCUCCCa -3' miRNA: 3'- -UCuGCUGGa----GGGUCugUACuGGGGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 91049 | 0.7 | 0.586978 |
Target: 5'- -aACG-CCUCgCGGugGUGAgCCCCGg -3' miRNA: 3'- ucUGCuGGAGgGUCugUACUgGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 113926 | 0.66 | 0.799933 |
Target: 5'- cGGugGGCaCUUCCAGGCuuu-CCCCUa -3' miRNA: 3'- -UCugCUG-GAGGGUCUGuacuGGGGGc -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 115326 | 0.71 | 0.518517 |
Target: 5'- cGAgGACCUgCUGGGCG-GACUCCCGg -3' miRNA: 3'- uCUgCUGGAgGGUCUGUaCUGGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 115820 | 0.67 | 0.754486 |
Target: 5'- gAGcCGGCggCCCAGGCcgGAgCCUCGg -3' miRNA: 3'- -UCuGCUGgaGGGUCUGuaCUgGGGGC- -5' |
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2742 | 3' | -58.4 | NC_001491.2 | + | 116581 | 0.67 | 0.791101 |
Target: 5'- gGGGCGuccGCCgucCCCGGACugGACCCCa- -3' miRNA: 3'- -UCUGC---UGGa--GGGUCUGuaCUGGGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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