miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27420 3' -68.4 NC_005869.1 + 22536 0.68 0.0897
Target:  5'- cUCCCCGGCCaGCGCCCggCGgaggCCa- -3'
miRNA:   3'- cAGGGGCCGGaCGCGGGggGCa---GGgg -5'
27420 3' -68.4 NC_005869.1 + 16749 0.69 0.080493
Target:  5'- uGUCgCCGcGCCcgaggugcUGCccaGCCuCCCCGUCUCCa -3'
miRNA:   3'- -CAGgGGC-CGG--------ACG---CGG-GGGGCAGGGG- -5'
27420 3' -68.4 NC_005869.1 + 17489 0.69 0.078336
Target:  5'- -gCCCCGcgcgcgccGCgUGCGCCUCgCGcCCCCa -3'
miRNA:   3'- caGGGGC--------CGgACGCGGGGgGCaGGGG- -5'
27420 3' -68.4 NC_005869.1 + 14654 0.69 0.078336
Target:  5'- gGUCCCCGGuCCaGCGUUCCCCGgaugUCa- -3'
miRNA:   3'- -CAGGGGCC-GGaCGCGGGGGGCa---GGgg -5'
27420 3' -68.4 NC_005869.1 + 32284 0.69 0.074187
Target:  5'- gGUgCCCGGCCcgUGCGCUCgCUCaacUCCCCc -3'
miRNA:   3'- -CAgGGGCCGG--ACGCGGG-GGGc--AGGGG- -5'
27420 3' -68.4 NC_005869.1 + 21670 0.69 0.074187
Target:  5'- cUCCCCagcgggGGCCUGCaGCCCCCacaGgggCCgCa -3'
miRNA:   3'- cAGGGG------CCGGACG-CGGGGGg--Ca--GGgG- -5'
27420 3' -68.4 NC_005869.1 + 30914 0.69 0.072193
Target:  5'- -aCCCUGGCCgucaGCcgGCCUCCCcUUCCCa -3'
miRNA:   3'- caGGGGCCGGa---CG--CGGGGGGcAGGGG- -5'
27420 3' -68.4 NC_005869.1 + 23118 0.69 0.070058
Target:  5'- -cCCCCcGCCUccuccacGCGCCCCUCaaaGUCCUCg -3'
miRNA:   3'- caGGGGcCGGA-------CGCGGGGGG---CAGGGG- -5'
27420 3' -68.4 NC_005869.1 + 28692 0.69 0.068357
Target:  5'- -aCCCUGGCCaccgaGCaGCCCCagaCCGcCCCCu -3'
miRNA:   3'- caGGGGCCGGa----CG-CGGGG---GGCaGGGG- -5'
27420 3' -68.4 NC_005869.1 + 26382 0.71 0.050534
Target:  5'- -gCCCCGGCCUGCcggacgaCCCCGaggaCCCCc -3'
miRNA:   3'- caGGGGCCGGACGcgg----GGGGCa---GGGG- -5'
27420 3' -68.4 NC_005869.1 + 14879 0.71 0.050395
Target:  5'- cUUCCCGGagaaccagauccuCCUGCGCCCgCCagaGUCCaCCa -3'
miRNA:   3'- cAGGGGCC-------------GGACGCGGG-GGg--CAGG-GG- -5'
27420 3' -68.4 NC_005869.1 + 13316 0.72 0.04164
Target:  5'- -gCCgCCGGCCgccgccgccGCGCCUCCCGcUCCUCc -3'
miRNA:   3'- caGG-GGCCGGa--------CGCGGGGGGC-AGGGG- -5'
27420 3' -68.4 NC_005869.1 + 18689 0.72 0.040502
Target:  5'- -gCCgUGGCCcacaauaagaUGCGCCCCCCG-CCgCCg -3'
miRNA:   3'- caGGgGCCGG----------ACGCGGGGGGCaGG-GG- -5'
27420 3' -68.4 NC_005869.1 + 28037 0.75 0.024529
Target:  5'- -aCCCCGGCCcGCGCcuuuuauacCCCCCGaCCCg -3'
miRNA:   3'- caGGGGCCGGaCGCG---------GGGGGCaGGGg -5'
27420 3' -68.4 NC_005869.1 + 13094 0.79 0.011177
Target:  5'- -aCCCCGGCCcucucGCGCgUCCCGUCCCg -3'
miRNA:   3'- caGGGGCCGGa----CGCGgGGGGCAGGGg -5'
27420 3' -68.4 NC_005869.1 + 24674 1.1 0.000026
Target:  5'- cGUCCCCGGCCUGCGCCCCCCGUCCCCg -3'
miRNA:   3'- -CAGGGGCCGGACGCGGGGGGCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.