miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27420 5' -50.7 NC_005869.1 + 5057 0.67 0.752695
Target:  5'- uCGGCcucccagggagaggaGGUGGGAGAGGGAGGCGaAGGc -3'
miRNA:   3'- cGUCG---------------UCGUCUUCUUCUUCUGC-UCCu -5'
27420 5' -50.7 NC_005869.1 + 11584 0.67 0.752695
Target:  5'- cGUGGCGGUGGgcGcGGAAGuaggcggaguggcgaGCGAGGAa -3'
miRNA:   3'- -CGUCGUCGUCuuCuUCUUC---------------UGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 247 0.67 0.748231
Target:  5'- cGCGGaGGCGGggGAAuuccGAucGGACGAuGGGg -3'
miRNA:   3'- -CGUCgUCGUCuuCUU----CU--UCUGCU-CCU- -5'
27420 5' -50.7 NC_005869.1 + 19563 0.67 0.748231
Target:  5'- aCGGgAGacauuaaaauuaCAGAAGAAGAAGACGAaGAg -3'
miRNA:   3'- cGUCgUC------------GUCUUCUUCUUCUGCUcCU- -5'
27420 5' -50.7 NC_005869.1 + 26397 0.67 0.747112
Target:  5'- gGCAGUuuGCucaguacccucgaGGAacuGGAGGAGGAgGAGGAa -3'
miRNA:   3'- -CGUCGu-CG-------------UCU---UCUUCUUCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 10689 0.67 0.736979
Target:  5'- cGCGGCcGCGc--GAGGAGGGgGAGGGc -3'
miRNA:   3'- -CGUCGuCGUcuuCUUCUUCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 8589 0.67 0.736979
Target:  5'- -gGGCAGCGGGAGGuggucgcggcgcAGAcgcgAGGCGuGGGc -3'
miRNA:   3'- cgUCGUCGUCUUCU------------UCU----UCUGCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 21620 0.67 0.736979
Target:  5'- aGCAGCAGCAGccGGGuguuGGGCGucagcaGGGAg -3'
miRNA:   3'- -CGUCGUCGUCuuCUUcu--UCUGC------UCCU- -5'
27420 5' -50.7 NC_005869.1 + 10919 0.68 0.725605
Target:  5'- -gAGgGGCGcguGGAGGAGGCGGGGGg -3'
miRNA:   3'- cgUCgUCGUcuuCUUCUUCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 16435 0.68 0.722171
Target:  5'- -gGGCAGCAcGAugggccgccucggcAGccGAGGGCGGGGGa -3'
miRNA:   3'- cgUCGUCGU-CU--------------UCuuCUUCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 26484 0.68 0.714122
Target:  5'- aGCAGCAGCAGcAAGAGcaucAGccaGCGcAGGAa -3'
miRNA:   3'- -CGUCGUCGUC-UUCUUcu--UC---UGC-UCCU- -5'
27420 5' -50.7 NC_005869.1 + 3357 0.68 0.69089
Target:  5'- gGCAuGCAGCcccacGggGAAGcuuguGugGAGGAu -3'
miRNA:   3'- -CGU-CGUCGu----CuuCUUCuu---CugCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 6256 0.68 0.69089
Target:  5'- aGCAGCAGCGGuuAGGgcacuggcggcGGugcuGGuCGAGGAg -3'
miRNA:   3'- -CGUCGUCGUCu-UCU-----------UCu---UCuGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 5622 0.68 0.68738
Target:  5'- cCAGcCAGguGAgcuggggguucuggGGAucGAAGACGAGGGg -3'
miRNA:   3'- cGUC-GUCguCU--------------UCUu-CUUCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 1941 0.68 0.679169
Target:  5'- cGCAGCGGCAGcAGuAGcAGugGuGGc -3'
miRNA:   3'- -CGUCGUCGUCuUCuUCuUCugCuCCu -5'
27420 5' -50.7 NC_005869.1 + 27965 0.69 0.667396
Target:  5'- uGCAGCcGCAGcgcGAGAcgccGGAGACGcGGAc -3'
miRNA:   3'- -CGUCGuCGUC---UUCUu---CUUCUGCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 33059 0.69 0.663856
Target:  5'- -aGGCAGCAGggGuacguccccagugaGGGAcaccuGGAUGGGGGg -3'
miRNA:   3'- cgUCGUCGUCuuC--------------UUCU-----UCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 33578 0.69 0.648484
Target:  5'- aGCAGCAGUcggucgugggccaugAGAGGggGcuGAUG-GGAa -3'
miRNA:   3'- -CGUCGUCG---------------UCUUCuuCuuCUGCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 14541 0.69 0.631898
Target:  5'- cGCAGCuaccacGUGGgcGAGGAccccgAGGCGGGGGa -3'
miRNA:   3'- -CGUCGu-----CGUCuuCUUCU-----UCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 6674 0.69 0.631898
Target:  5'- aGCGGCGggcggccagggcGCGGucGAAGggGuuGAGGGg -3'
miRNA:   3'- -CGUCGU------------CGUCuuCUUCuuCugCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.