miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27422 3' -52 NC_005869.1 + 11787 0.69 0.58981
Target:  5'- cCGCAgGCgGCGCUguGCgguCCcUGCa -3'
miRNA:   3'- -GCGUgUGgCGCGAguUGaauGGaACG- -5'
27422 3' -52 NC_005869.1 + 15902 0.69 0.566697
Target:  5'- aGCGCGCCGcCGUUCAuCUgACUcgUGCc -3'
miRNA:   3'- gCGUGUGGC-GCGAGUuGAaUGGa-ACG- -5'
27422 3' -52 NC_005869.1 + 17494 0.69 0.566697
Target:  5'- gCGCGCGCCGCGU---GC--GCCUcGCg -3'
miRNA:   3'- -GCGUGUGGCGCGaguUGaaUGGAaCG- -5'
27422 3' -52 NC_005869.1 + 32153 0.69 0.566697
Target:  5'- cCGCu--CCGCGCUCGGCau-CCUgaugaUGCa -3'
miRNA:   3'- -GCGuguGGCGCGAGUUGaauGGA-----ACG- -5'
27422 3' -52 NC_005869.1 + 21659 0.7 0.521257
Target:  5'- aCGUGC-CCGCGCUCcccAGCggggGCCU-GCa -3'
miRNA:   3'- -GCGUGuGGCGCGAG---UUGaa--UGGAaCG- -5'
27422 3' -52 NC_005869.1 + 24998 0.7 0.521257
Target:  5'- aGCACAUCGCcaccaccCUCAAC-UACCU-GCa -3'
miRNA:   3'- gCGUGUGGCGc------GAGUUGaAUGGAaCG- -5'
27422 3' -52 NC_005869.1 + 28897 0.7 0.510111
Target:  5'- gCGCAUGCgCGUGCUCcACcagGCCcUGCa -3'
miRNA:   3'- -GCGUGUG-GCGCGAGuUGaa-UGGaACG- -5'
27422 3' -52 NC_005869.1 + 17383 0.7 0.49249
Target:  5'- aGCGCcgcgGCCGCGCUgAGCUgcggcgccacgacgGCCUgggGCc -3'
miRNA:   3'- gCGUG----UGGCGCGAgUUGAa-------------UGGAa--CG- -5'
27422 3' -52 NC_005869.1 + 18087 0.73 0.376434
Target:  5'- aGCACcucgucGCUGuCGCUCAACccccgcuugGCCUUGCg -3'
miRNA:   3'- gCGUG------UGGC-GCGAGUUGaa-------UGGAACG- -5'
27422 3' -52 NC_005869.1 + 31763 0.74 0.298777
Target:  5'- uCGUACACCGUGCcCGGCUgcaacuccACCUUGg -3'
miRNA:   3'- -GCGUGUGGCGCGaGUUGAa-------UGGAACg -5'
27422 3' -52 NC_005869.1 + 16643 0.75 0.275801
Target:  5'- cCGUcgugGCGCCGCaGCUCAGCgcgGCCgcgGCg -3'
miRNA:   3'- -GCG----UGUGGCG-CGAGUUGaa-UGGaa-CG- -5'
27422 3' -52 NC_005869.1 + 23080 0.79 0.148286
Target:  5'- gGCugGCCGCGCUCAugUggGCCc-GCg -3'
miRNA:   3'- gCGugUGGCGCGAGUugAa-UGGaaCG- -5'
27422 3' -52 NC_005869.1 + 24365 1.14 0.000513
Target:  5'- aCGCACACCGCGCUCAACUUACCUUGCg -3'
miRNA:   3'- -GCGUGUGGCGCGAGUUGAAUGGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.