miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27424 3' -57 NC_005869.1 + 16653 0.68 0.333188
Target:  5'- gCC-GCAGCUcagCGCgGCCGCgGCGC-UGg -3'
miRNA:   3'- -GGuCGUCGAa--GUGgUGGCG-CGCGuAC- -5'
27424 3' -57 NC_005869.1 + 17400 0.69 0.324947
Target:  5'- aCGGCGGUggugcccccCACC-CCGCGCGCcccgGUGg -3'
miRNA:   3'- gGUCGUCGaa-------GUGGuGGCGCGCG----UAC- -5'
27424 3' -57 NC_005869.1 + 27770 0.69 0.324947
Target:  5'- aCGGCAGUUUCGCCACaCGCcuCGaCAa- -3'
miRNA:   3'- gGUCGUCGAAGUGGUG-GCGc-GC-GUac -5'
27424 3' -57 NC_005869.1 + 6810 0.69 0.293509
Target:  5'- gUAGCAGCg--GCCGCCGCGCa---- -3'
miRNA:   3'- gGUCGUCGaagUGGUGGCGCGcguac -5'
27424 3' -57 NC_005869.1 + 23848 0.7 0.286029
Target:  5'- aCCAGgGGCUUgGCa--CGCGCGCGc- -3'
miRNA:   3'- -GGUCgUCGAAgUGgugGCGCGCGUac -5'
27424 3' -57 NC_005869.1 + 18470 0.7 0.278701
Target:  5'- gCCGGguGCUcCGCCuCCGgCGCGCc-- -3'
miRNA:   3'- -GGUCguCGAaGUGGuGGC-GCGCGuac -5'
27424 3' -57 NC_005869.1 + 21185 0.7 0.278701
Target:  5'- -aAGUAGUUgggCGCCACCGCggccGCGCgAUGg -3'
miRNA:   3'- ggUCGUCGAa--GUGGUGGCG----CGCG-UAC- -5'
27424 3' -57 NC_005869.1 + 9594 0.7 0.271523
Target:  5'- gCGGCGGCUgagcucCGCCACCGaggGCGCc-- -3'
miRNA:   3'- gGUCGUCGAa-----GUGGUGGCg--CGCGuac -5'
27424 3' -57 NC_005869.1 + 13373 0.7 0.271523
Target:  5'- aUCAGCAGCcggcugUUCACCuggcGCaCGCGCGCc-- -3'
miRNA:   3'- -GGUCGUCG------AAGUGG----UG-GCGCGCGuac -5'
27424 3' -57 NC_005869.1 + 22897 0.7 0.264494
Target:  5'- aUCAGCAGCagCugCGCggucaGCGCGCGg- -3'
miRNA:   3'- -GGUCGUCGaaGugGUGg----CGCGCGUac -5'
27424 3' -57 NC_005869.1 + 8938 0.7 0.264494
Target:  5'- aCCAGCuggccgucGGCgUC-CCG-CGCGCGCAUGa -3'
miRNA:   3'- -GGUCG--------UCGaAGuGGUgGCGCGCGUAC- -5'
27424 3' -57 NC_005869.1 + 12643 0.7 0.264494
Target:  5'- aCCGGCAGCggCgGCUGCCGgCGgCGUAUGc -3'
miRNA:   3'- -GGUCGUCGaaG-UGGUGGC-GC-GCGUAC- -5'
27424 3' -57 NC_005869.1 + 17066 0.7 0.264494
Target:  5'- cCCGGCcaccGCggUCGCCuCCGUGCGCGc- -3'
miRNA:   3'- -GGUCGu---CGa-AGUGGuGGCGCGCGUac -5'
27424 3' -57 NC_005869.1 + 13662 0.7 0.264494
Target:  5'- gCCAGCAGCgcCGCCGCagggaGCGuCGCc-- -3'
miRNA:   3'- -GGUCGUCGaaGUGGUGg----CGC-GCGuac -5'
27424 3' -57 NC_005869.1 + 9934 0.7 0.257614
Target:  5'- gCAGCAGCgccaggUCgGCCACCaCGCGCu-- -3'
miRNA:   3'- gGUCGUCGa-----AG-UGGUGGcGCGCGuac -5'
27424 3' -57 NC_005869.1 + 21398 0.71 0.23155
Target:  5'- gCCGGCAGC--CGCCGCUGC-CGguUGg -3'
miRNA:   3'- -GGUCGUCGaaGUGGUGGCGcGCguAC- -5'
27424 3' -57 NC_005869.1 + 26196 0.72 0.191303
Target:  5'- aCCAGCAGCagccgaGCCACCGC-CGCc-- -3'
miRNA:   3'- -GGUCGUCGaag---UGGUGGCGcGCGuac -5'
27424 3' -57 NC_005869.1 + 21506 0.74 0.150367
Target:  5'- gCAGCGGCUuuguauccgcggccuUCACCGCCGgcaUGCGCGa- -3'
miRNA:   3'- gGUCGUCGA---------------AGUGGUGGC---GCGCGUac -5'
27424 3' -57 NC_005869.1 + 23430 0.74 0.13265
Target:  5'- gCCGGCGGCUUCAUCuGCCGCagaacgggaUGCAUGg -3'
miRNA:   3'- -GGUCGUCGAAGUGG-UGGCGc--------GCGUAC- -5'
27424 3' -57 NC_005869.1 + 22081 0.74 0.131514
Target:  5'- uCCAGCAGCgcguUCACCACggucagcaccuucuCGUGCGUcgGg -3'
miRNA:   3'- -GGUCGUCGa---AGUGGUG--------------GCGCGCGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.