Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27425 | 5' | -56.2 | NC_005869.1 | + | 33570 | 0.74 | 0.141754 |
Target: 5'- cCGCggCCAGCAGCaGUcgGUCGUGgGCCAUg -3' miRNA: 3'- -GCGa-GGUCGUCG-CG--UAGCAUgUGGUA- -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 16590 | 0.67 | 0.443656 |
Target: 5'- gCGgUCCAGcCGGCGCAUCaUucuggcuccGCGCCGg -3' miRNA: 3'- -GCgAGGUC-GUCGCGUAGcA---------UGUGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 29118 | 0.67 | 0.433524 |
Target: 5'- aGCUCUcgggcaAGCAGCuCGUCGUugcCACCGa -3' miRNA: 3'- gCGAGG------UCGUCGcGUAGCAu--GUGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 24209 | 0.67 | 0.394384 |
Target: 5'- cCGcCUCCAGCgAGUGCuUCGUcuCGCCGc -3' miRNA: 3'- -GC-GAGGUCG-UCGCGuAGCAu-GUGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 5405 | 0.68 | 0.384029 |
Target: 5'- gCGCuUCCgAGCuGCGCGUCGUucagguaGCACUg- -3' miRNA: 3'- -GCG-AGG-UCGuCGCGUAGCA-------UGUGGua -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 11823 | 0.68 | 0.348796 |
Target: 5'- gGCUCU-GCGGCGCAUCaugGCGCUg- -3' miRNA: 3'- gCGAGGuCGUCGCGUAGca-UGUGGua -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 17483 | 0.69 | 0.307091 |
Target: 5'- -cCUCCAGCcccgcgcGCGCcgCGUGCGCCu- -3' miRNA: 3'- gcGAGGUCGu------CGCGuaGCAUGUGGua -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 12109 | 0.69 | 0.299222 |
Target: 5'- uCGC-CCAGCgcgAGCGC-UCGaGCGCCAa -3' miRNA: 3'- -GCGaGGUCG---UCGCGuAGCaUGUGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 9931 | 0.7 | 0.29151 |
Target: 5'- gGCg-CAGCAGCGCcagGUCGgcCACCAc -3' miRNA: 3'- gCGagGUCGUCGCG---UAGCauGUGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 10514 | 0.71 | 0.241855 |
Target: 5'- gGCUCCAGCAGgGgG-CGUcCGCCGUc -3' miRNA: 3'- gCGAGGUCGUCgCgUaGCAuGUGGUA- -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 28887 | 0.7 | 0.25528 |
Target: 5'- aGCUCUGGgAGCGCAUgcgCGUGCuCCAc -3' miRNA: 3'- gCGAGGUCgUCGCGUA---GCAUGuGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 18047 | 0.7 | 0.29151 |
Target: 5'- cCGCcccgUCCAGCGGCGCcuggggcgCGUGC-CCAg -3' miRNA: 3'- -GCG----AGGUCGUCGCGua------GCAUGuGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 20778 | 0.69 | 0.340141 |
Target: 5'- gGggCCAGCAGCGCGUCccACuCCAg -3' miRNA: 3'- gCgaGGUCGUCGCGUAGcaUGuGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 22847 | 0.68 | 0.384963 |
Target: 5'- gGCU-CAGCAGCGCcUCcuuCACCAUg -3' miRNA: 3'- gCGAgGUCGUCGCGuAGcauGUGGUA- -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 3031 | 0.67 | 0.403954 |
Target: 5'- aGCUCgAGCAGCGggagGUgGUGCugCAc -3' miRNA: 3'- gCGAGgUCGUCGCg---UAgCAUGugGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 20375 | 0.67 | 0.403954 |
Target: 5'- aCGCUCCcugcGGCGGCGCugcugGCAUCAUc -3' miRNA: 3'- -GCGAGG----UCGUCGCGuagcaUGUGGUA- -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 17376 | 0.67 | 0.413669 |
Target: 5'- cCGCUCCAGCGccgcggccGCGCugagcugCG-GCGCCAc -3' miRNA: 3'- -GCGAGGUCGU--------CGCGua-----GCaUGUGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 19583 | 0.67 | 0.423527 |
Target: 5'- aGgUCCAGCAGCGCGgggaUGUugcccccCGCCAg -3' miRNA: 3'- gCgAGGUCGUCGCGUa---GCAu------GUGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 32067 | 0.66 | 0.453921 |
Target: 5'- uGCUCCcGCgGGCGC-UUGgGCACCAc -3' miRNA: 3'- gCGAGGuCG-UCGCGuAGCaUGUGGUa -5' |
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27425 | 5' | -56.2 | NC_005869.1 | + | 22023 | 1.06 | 0.000533 |
Target: 5'- cCGCUCCAGCAGCGCAUCGUACACCAUg -3' miRNA: 3'- -GCGAGGUCGUCGCGUAGCAUGUGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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