Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27427 | 3' | -58.5 | NC_005869.1 | + | 20352 | 1.11 | 0.000204 |
Target: 5'- aCUCUCGUAGGACGGCGGAGGCGACGCu -3' miRNA: 3'- -GAGAGCAUCCUGCCGCCUCCGCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 4589 | 0.76 | 0.100258 |
Target: 5'- -aCUCGUcgAGGACGauggcgauggguccGCGGGcGGCGGCGCg -3' miRNA: 3'- gaGAGCA--UCCUGC--------------CGCCU-CCGCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 8247 | 0.74 | 0.123192 |
Target: 5'- -cCUCGUugAGGAgGGCGGuguugguGGCGAgGCa -3' miRNA: 3'- gaGAGCA--UCCUgCCGCCu------CCGCUgCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 30162 | 0.74 | 0.123192 |
Target: 5'- gCUCUCcgGGGugGGUGGuGGUGGCGg -3' miRNA: 3'- -GAGAGcaUCCugCCGCCuCCGCUGCg -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 16453 | 0.74 | 0.139281 |
Target: 5'- -cCUCGgcagccgAGGGCGGgGGAccgccgcugcgggcgGGCGGCGCu -3' miRNA: 3'- gaGAGCa------UCCUGCCgCCU---------------CCGCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 18390 | 0.74 | 0.141619 |
Target: 5'- aUCUC--AGGACGaggugcguuuGCGGAGGCGGCGg -3' miRNA: 3'- gAGAGcaUCCUGC----------CGCCUCCGCUGCg -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 9250 | 0.73 | 0.158142 |
Target: 5'- cCUCUa--AGGAgGGCGGGGGCG-UGCu -3' miRNA: 3'- -GAGAgcaUCCUgCCGCCUCCGCuGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 11717 | 0.72 | 0.167041 |
Target: 5'- gCUCUgaagcuggggCGgcGG-CGGCGGGGGUGAgCGCg -3' miRNA: 3'- -GAGA----------GCauCCuGCCGCCUCCGCU-GCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 6855 | 0.72 | 0.185694 |
Target: 5'- -gCUCGUGGGAgGGCgcgaGGAGGUucggccgaggugcGGCGCc -3' miRNA: 3'- gaGAGCAUCCUgCCG----CCUCCG-------------CUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 15542 | 0.71 | 0.196481 |
Target: 5'- aUgUgGUGGcGGCGGUGGAagcGGUGGCGCg -3' miRNA: 3'- gAgAgCAUC-CUGCCGCCU---CCGCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 17837 | 0.71 | 0.20726 |
Target: 5'- -cCUCGgcGcaGCGGCGGcAGGCGGCGg -3' miRNA: 3'- gaGAGCauCc-UGCCGCC-UCCGCUGCg -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 15283 | 0.71 | 0.224383 |
Target: 5'- ---cCGcgGGGGCcggGGCGGGGGCGGCGg -3' miRNA: 3'- gagaGCa-UCCUG---CCGCCUCCGCUGCg -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 7814 | 0.7 | 0.230352 |
Target: 5'- gUCUgCGUAgcuGGAgCGGUGGuGGCGGCGg -3' miRNA: 3'- gAGA-GCAU---CCU-GCCGCCuCCGCUGCg -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 9952 | 0.7 | 0.255578 |
Target: 5'- ----gGUGGcGGCGGUGGuGGCGGCGg -3' miRNA: 3'- gagagCAUC-CUGCCGCCuCCGCUGCg -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 14821 | 0.7 | 0.262229 |
Target: 5'- --aUCGUGGGugGGCGcGAcGGUGGgGUu -3' miRNA: 3'- gagAGCAUCCugCCGC-CU-CCGCUgCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 27481 | 0.69 | 0.275951 |
Target: 5'- aCUCUcCGgccGGACGGCaucuuccagcucGGAGGCGGaggcCGCu -3' miRNA: 3'- -GAGA-GCau-CCUGCCG------------CCUCCGCU----GCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 10640 | 0.69 | 0.290242 |
Target: 5'- -----cUGGGcGCGGaGGGGGCGACGCg -3' miRNA: 3'- gagagcAUCC-UGCCgCCUCCGCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 10163 | 0.69 | 0.297602 |
Target: 5'- cCUCUccgccCGUgcAGGAgCGGCGGAaGCGcGCGCg -3' miRNA: 3'- -GAGA-----GCA--UCCU-GCCGCCUcCGC-UGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 15474 | 0.69 | 0.305106 |
Target: 5'- aUCUCcu-GGGCGGCGGcGGGCGcuugGCGg -3' miRNA: 3'- gAGAGcauCCUGCCGCC-UCCGC----UGCg -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 5371 | 0.68 | 0.344792 |
Target: 5'- cCUCUUG-AGGcugaGGCGGcuggugcugaAGGUGGCGCu -3' miRNA: 3'- -GAGAGCaUCCug--CCGCC----------UCCGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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