Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27427 | 5' | -53.9 | NC_005869.1 | + | 33218 | 0.66 | 0.641698 |
Target: 5'- cGcGCugaUAUCCUCCUCAuuacugucccccucuUCUGGgGGGu -3' miRNA: 3'- aC-CGua-GUAGGAGGAGU---------------AGACUgCCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 11992 | 0.66 | 0.637108 |
Target: 5'- gUGGCGg---CCUCCg-GUgUGGCGGGc -3' miRNA: 3'- -ACCGUaguaGGAGGagUAgACUGCCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 9237 | 0.66 | 0.682849 |
Target: 5'- -uGCcgCAccUCCUCCUCuaaggagGGCGGGg -3' miRNA: 3'- acCGuaGU--AGGAGGAGuaga---CUGCCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 22652 | 0.66 | 0.647433 |
Target: 5'- aGGCucucaucGUCGUCCUCCgu-UCccACGGGg -3' miRNA: 3'- aCCG-------UAGUAGGAGGaguAGacUGCCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 199 | 0.67 | 0.591282 |
Target: 5'- gGGCG--GUCCUCCgCGg--GGCGGGg -3' miRNA: 3'- aCCGUagUAGGAGGaGUagaCUGCCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 20558 | 0.67 | 0.613015 |
Target: 5'- cUGGCGccagucuUCcUCCUCCUCGUCgucuucgagGGCcccGGGg -3' miRNA: 3'- -ACCGU-------AGuAGGAGGAGUAGa--------CUG---CCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 26593 | 0.67 | 0.591282 |
Target: 5'- cGGCcgCAUCCUCUUCAa-UGACa-- -3' miRNA: 3'- aCCGuaGUAGGAGGAGUagACUGccc -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 23823 | 0.69 | 0.459534 |
Target: 5'- -aGCcUCGUCCUCCUCcuccucgCUGACcaGGGg -3' miRNA: 3'- acCGuAGUAGGAGGAGua-----GACUG--CCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 6558 | 0.7 | 0.428989 |
Target: 5'- gGGCAggaCGUCCagcuggUCCUCGUCgGGgGGGu -3' miRNA: 3'- aCCGUa--GUAGG------AGGAGUAGaCUgCCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 9319 | 0.7 | 0.426 |
Target: 5'- gUGGCAucuccUCGUCUUCUUCuUCUGcugcugcugccuccGCGGGg -3' miRNA: 3'- -ACCGU-----AGUAGGAGGAGuAGAC--------------UGCCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 20688 | 0.72 | 0.328051 |
Target: 5'- aUGGCGUCgauGUCCUCCUCcagggagGAgCGGGa -3' miRNA: 3'- -ACCGUAG---UAGGAGGAGuaga---CU-GCCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 9735 | 0.74 | 0.259363 |
Target: 5'- gGGCGaguccuccUCcugcUCCUCCUCGUCccGGCGGGg -3' miRNA: 3'- aCCGU--------AGu---AGGAGGAGUAGa-CUGCCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 5191 | 0.74 | 0.259363 |
Target: 5'- cGGUAUCGUCCUCCagCAggUCUGGuuguuucuCGGGu -3' miRNA: 3'- aCCGUAGUAGGAGGa-GU--AGACU--------GCCC- -5' |
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27427 | 5' | -53.9 | NC_005869.1 | + | 20396 | 1.1 | 0.000663 |
Target: 5'- cUGGCAUCAUCCUCCUCAUCUGACGGGc -3' miRNA: 3'- -ACCGUAGUAGGAGGAGUAGACUGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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