Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27429 | 3' | -58.2 | NC_005869.1 | + | 1666 | 0.67 | 0.363467 |
Target: 5'- gUGGGCGGuCCUCGAacggaagaguuucUGcAUGCCUgguuugCGGUGg -3' miRNA: 3'- -AUCUGCC-GGAGCU-------------AC-UGCGGA------GCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 5300 | 0.71 | 0.201311 |
Target: 5'- cGGAgGGCCcgCGugaggGugGUCUCGGUGa -3' miRNA: 3'- aUCUgCCGGa-GCua---CugCGGAGCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 5661 | 0.76 | 0.085652 |
Target: 5'- aGGACGGCCUCGGaggaccacaucUGGCGCUgcacgaugagggCGGUGg -3' miRNA: 3'- aUCUGCCGGAGCU-----------ACUGCGGa-----------GCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 6795 | 0.71 | 0.201311 |
Target: 5'- uUGGACGGgg-CG-UGGCGUCUCGGUGa -3' miRNA: 3'- -AUCUGCCggaGCuACUGCGGAGCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 7288 | 0.66 | 0.391329 |
Target: 5'- -cGGCGGCCUUGcgGAgGCU--GGUGu -3' miRNA: 3'- auCUGCCGGAGCuaCUgCGGagCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 7587 | 0.66 | 0.419584 |
Target: 5'- aGGAgGGCUUgGAUGGCcuCgUCGGUGu -3' miRNA: 3'- aUCUgCCGGAgCUACUGc-GgAGCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 8258 | 0.67 | 0.373195 |
Target: 5'- aGGGCGGUgUUGGUGGCGaggcagCGGUGc -3' miRNA: 3'- aUCUGCCGgAGCUACUGCgga---GCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 9595 | 0.67 | 0.362591 |
Target: 5'- -cGGCGGCUgagcuccgccacCGAgGGCGCCUCGGc- -3' miRNA: 3'- auCUGCCGGa-----------GCUaCUGCGGAGCCac -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 10090 | 0.69 | 0.283993 |
Target: 5'- gUAGugGGgCUgGAUGA--CCUCGGUGu -3' miRNA: 3'- -AUCugCCgGAgCUACUgcGGAGCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 11748 | 0.67 | 0.355639 |
Target: 5'- gAGcGCGGCCUCccUGGCGCCcgagCGGg- -3' miRNA: 3'- aUC-UGCCGGAGcuACUGCGGa---GCCac -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 11993 | 0.68 | 0.330414 |
Target: 5'- -uGGCGGCCUcCGGUGugGCgggCGGc- -3' miRNA: 3'- auCUGCCGGA-GCUACugCGga-GCCac -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 12207 | 1.06 | 0.000476 |
Target: 5'- gUAGACGGCCUCGAUGACGCCUCGGUGc -3' miRNA: 3'- -AUCUGCCGGAGCUACUGCGGAGCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 13785 | 0.67 | 0.364344 |
Target: 5'- ---uUGGUCUCGAUGGCGCCgauGGg- -3' miRNA: 3'- aucuGCCGGAGCUACUGCGGag-CCac -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 17606 | 0.66 | 0.391329 |
Target: 5'- -uGACGGCCgugCGAgggGACaccaggggcaugGgCUCGGUGa -3' miRNA: 3'- auCUGCCGGa--GCUa--CUG------------CgGAGCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 17818 | 0.7 | 0.230323 |
Target: 5'- cGGugGGUUcCGcGUGGCGCCUCGGc- -3' miRNA: 3'- aUCugCCGGaGC-UACUGCGGAGCCac -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 18249 | 0.67 | 0.355639 |
Target: 5'- gAGAUGGCCauggcCGA--GCGCgUCGGUGc -3' miRNA: 3'- aUCUGCCGGa----GCUacUGCGgAGCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 19074 | 0.66 | 0.419584 |
Target: 5'- aGGAUGGCgacgccgUCGAUGAUGCCgcagUGGUc -3' miRNA: 3'- aUCUGCCGg------AGCUACUGCGGa---GCCAc -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 20733 | 0.77 | 0.076655 |
Target: 5'- -cGGCGGCCggCGgcGGCGCCUgGGUGc -3' miRNA: 3'- auCUGCCGGa-GCuaCUGCGGAgCCAC- -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 20966 | 0.67 | 0.355639 |
Target: 5'- gUGGAgGGCCgCGAgGGCGgcuCCUCGGUc -3' miRNA: 3'- -AUCUgCCGGaGCUaCUGC---GGAGCCAc -5' |
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27429 | 3' | -58.2 | NC_005869.1 | + | 24425 | 0.69 | 0.269708 |
Target: 5'- cGGA-GGCCgcCGA-GGCGcCCUCGGUGg -3' miRNA: 3'- aUCUgCCGGa-GCUaCUGC-GGAGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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