miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27429 5' -54.1 NC_005869.1 + 7624 0.66 0.656275
Target:  5'- gGCGCCGCAGcUGggCAuAGGCCagGGg -3'
miRNA:   3'- gUGCGGCGUCuGCa-GUuUCUGGagCU- -5'
27429 5' -54.1 NC_005869.1 + 22440 0.66 0.644846
Target:  5'- aCGCGCCGCGGuCccCGGGGACCg--- -3'
miRNA:   3'- -GUGCGGCGUCuGcaGUUUCUGGagcu -5'
27429 5' -54.1 NC_005869.1 + 11875 0.66 0.643703
Target:  5'- uGCGCaGCAGGCGcugguacucaaagUCAuAGACCUgGGc -3'
miRNA:   3'- gUGCGgCGUCUGC-------------AGUuUCUGGAgCU- -5'
27429 5' -54.1 NC_005869.1 + 24416 0.66 0.633405
Target:  5'- gCGCaGCCGCGGAggcCGcCGAGGcgcCCUCGGu -3'
miRNA:   3'- -GUG-CGGCGUCU---GCaGUUUCu--GGAGCU- -5'
27429 5' -54.1 NC_005869.1 + 24612 0.66 0.633405
Target:  5'- uGCGCCGCAuGCGgggCGAGGuCaUCGAg -3'
miRNA:   3'- gUGCGGCGUcUGCa--GUUUCuGgAGCU- -5'
27429 5' -54.1 NC_005869.1 + 21824 0.66 0.633405
Target:  5'- --aGCCGCaccgAGGCGUCAucGAGGCCgUCu- -3'
miRNA:   3'- gugCGGCG----UCUGCAGU--UUCUGG-AGcu -5'
27429 5' -54.1 NC_005869.1 + 24259 0.66 0.621962
Target:  5'- -cCGCCuGCAGcGCGccggccgCAAAGACCUCa- -3'
miRNA:   3'- guGCGG-CGUC-UGCa------GUUUCUGGAGcu -5'
27429 5' -54.1 NC_005869.1 + 31731 0.66 0.621962
Target:  5'- aCAUGCUGCGGAUGgugaUCGGGcGCCUCa- -3'
miRNA:   3'- -GUGCGGCGUCUGC----AGUUUcUGGAGcu -5'
27429 5' -54.1 NC_005869.1 + 17496 0.67 0.599115
Target:  5'- gCGCGCCGCGuGCGccucgcgccccCAGAGcGCCUCGGc -3'
miRNA:   3'- -GUGCGGCGUcUGCa----------GUUUC-UGGAGCU- -5'
27429 5' -54.1 NC_005869.1 + 29430 0.67 0.591144
Target:  5'- cCGCGCCGCcgcccgcGGAcccaucgccauCGUCcucgacgagugcaugGAGGACCUCGGc -3'
miRNA:   3'- -GUGCGGCG-------UCU-----------GCAG---------------UUUCUGGAGCU- -5'
27429 5' -54.1 NC_005869.1 + 6202 0.67 0.565098
Target:  5'- -uCGCCGCGGGCGau---GGCUUCGGu -3'
miRNA:   3'- guGCGGCGUCUGCaguuuCUGGAGCU- -5'
27429 5' -54.1 NC_005869.1 + 24920 0.69 0.481761
Target:  5'- uGCGCCGCGcgagcccacuccccGACGaggggagacgccccUCGAGGACCUCc- -3'
miRNA:   3'- gUGCGGCGU--------------CUGC--------------AGUUUCUGGAGcu -5'
27429 5' -54.1 NC_005869.1 + 7782 0.69 0.477531
Target:  5'- -cCGCCGUAGGCGUgGAGcucGCUUCGGa -3'
miRNA:   3'- guGCGGCGUCUGCAgUUUc--UGGAGCU- -5'
27429 5' -54.1 NC_005869.1 + 15380 0.69 0.456665
Target:  5'- gGCGCCGCcaucgucGACGUCGgAGGGCCgcgCGc -3'
miRNA:   3'- gUGCGGCGu------CUGCAGU-UUCUGGa--GCu -5'
27429 5' -54.1 NC_005869.1 + 27981 0.69 0.446417
Target:  5'- gACGCCGgAGACG-CGgacuccggugacGAGGCCUgCGAa -3'
miRNA:   3'- gUGCGGCgUCUGCaGU------------UUCUGGA-GCU- -5'
27429 5' -54.1 NC_005869.1 + 11514 0.71 0.369385
Target:  5'- gCugGCCGgggaGGGCGagGAGGACCUgGAg -3'
miRNA:   3'- -GugCGGCg---UCUGCagUUUCUGGAgCU- -5'
27429 5' -54.1 NC_005869.1 + 9789 0.71 0.368482
Target:  5'- gCGCGCUGCAGGCGgaugCGGucggccaugccccAGGCCUCc- -3'
miRNA:   3'- -GUGCGGCGUCUGCa---GUU-------------UCUGGAGcu -5'
27429 5' -54.1 NC_005869.1 + 28112 0.73 0.257901
Target:  5'- cCugGaCGCGGACGaCGAGGACCUCu- -3'
miRNA:   3'- -GugCgGCGUCUGCaGUUUCUGGAGcu -5'
27429 5' -54.1 NC_005869.1 + 6752 0.78 0.124399
Target:  5'- aCAUGCCGCAGAUGUCAuAGACgUaGAg -3'
miRNA:   3'- -GUGCGGCGUCUGCAGUuUCUGgAgCU- -5'
27429 5' -54.1 NC_005869.1 + 12242 1.09 0.000759
Target:  5'- gCACGCCGCAGACGUCAAAGACCUCGAa -3'
miRNA:   3'- -GUGCGGCGUCUGCAGUUUCUGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.