miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2743 3' -54.3 NC_001491.2 + 145914 0.66 0.943525
Target:  5'- cGggGUCGuCcCACaGCCCguccCGCGAGUCc -3'
miRNA:   3'- -CaaUAGU-GuGUGcCGGGa---GCGCUCAG- -5'
2743 3' -54.3 NC_001491.2 + 147810 0.66 0.943065
Target:  5'- --cAUC-CAgGCGGCCCUCcgucucaGCGGGcCg -3'
miRNA:   3'- caaUAGuGUgUGCCGGGAG-------CGCUCaG- -5'
2743 3' -54.3 NC_001491.2 + 10750 0.66 0.933859
Target:  5'- aGUUGUCAC-CACGGCgUUCagguuCGGGUUg -3'
miRNA:   3'- -CAAUAGUGuGUGCCGgGAGc----GCUCAG- -5'
2743 3' -54.3 NC_001491.2 + 123141 0.67 0.928658
Target:  5'- ----aCACGCGCGGCCaggccucCGCGGG-Cg -3'
miRNA:   3'- caauaGUGUGUGCCGGga-----GCGCUCaG- -5'
2743 3' -54.3 NC_001491.2 + 22997 0.68 0.892292
Target:  5'- -----aGCACcCGGCCCcCGCGAGa- -3'
miRNA:   3'- caauagUGUGuGCCGGGaGCGCUCag -5'
2743 3' -54.3 NC_001491.2 + 143185 0.68 0.884687
Target:  5'- ---uUCAUACACGuccgcacgagggcGCCCUCGUGuGUUa -3'
miRNA:   3'- caauAGUGUGUGC-------------CGGGAGCGCuCAG- -5'
2743 3' -54.3 NC_001491.2 + 39452 0.68 0.870895
Target:  5'- ---cUCugGCGCGG-CUUCGCGAGa- -3'
miRNA:   3'- caauAGugUGUGCCgGGAGCGCUCag -5'
2743 3' -54.3 NC_001491.2 + 138290 0.69 0.847512
Target:  5'- ----aCGCgGCACGGCaCCUCGCuGGGUg -3'
miRNA:   3'- caauaGUG-UGUGCCG-GGAGCG-CUCAg -5'
2743 3' -54.3 NC_001491.2 + 28806 0.7 0.76734
Target:  5'- ---cUCACGC-CGGCCgagCGCGAGUUu -3'
miRNA:   3'- caauAGUGUGuGCCGGga-GCGCUCAG- -5'
2743 3' -54.3 NC_001491.2 + 145704 0.71 0.757688
Target:  5'- --aGUCcCACACGGCCgUCuGCGGGg- -3'
miRNA:   3'- caaUAGuGUGUGCCGGgAG-CGCUCag -5'
2743 3' -54.3 NC_001491.2 + 148358 0.71 0.757688
Target:  5'- ----gCGCGCGaacgcggccuCGGCCCUCGCGAacaGUCc -3'
miRNA:   3'- caauaGUGUGU----------GCCGGGAGCGCU---CAG- -5'
2743 3' -54.3 NC_001491.2 + 79161 0.73 0.635676
Target:  5'- -cUGUgGCACACGGUCCcCGCGGcgcuGUCa -3'
miRNA:   3'- caAUAgUGUGUGCCGGGaGCGCU----CAG- -5'
2743 3' -54.3 NC_001491.2 + 71627 0.79 0.343164
Target:  5'- aGUUG--ACACACGGCCCgCGUGGGUCc -3'
miRNA:   3'- -CAAUagUGUGUGCCGGGaGCGCUCAG- -5'
2743 3' -54.3 NC_001491.2 + 122851 0.8 0.298646
Target:  5'- --gAUUGCGCGCGGCCCUCcGCGAGc- -3'
miRNA:   3'- caaUAGUGUGUGCCGGGAG-CGCUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.