Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2743 | 3' | -54.3 | NC_001491.2 | + | 145914 | 0.66 | 0.943525 |
Target: 5'- cGggGUCGuCcCACaGCCCguccCGCGAGUCc -3' miRNA: 3'- -CaaUAGU-GuGUGcCGGGa---GCGCUCAG- -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 71627 | 0.79 | 0.343164 |
Target: 5'- aGUUG--ACACACGGCCCgCGUGGGUCc -3' miRNA: 3'- -CAAUagUGUGUGCCGGGaGCGCUCAG- -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 79161 | 0.73 | 0.635676 |
Target: 5'- -cUGUgGCACACGGUCCcCGCGGcgcuGUCa -3' miRNA: 3'- caAUAgUGUGUGCCGGGaGCGCU----CAG- -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 148358 | 0.71 | 0.757688 |
Target: 5'- ----gCGCGCGaacgcggccuCGGCCCUCGCGAacaGUCc -3' miRNA: 3'- caauaGUGUGU----------GCCGGGAGCGCU---CAG- -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 145704 | 0.71 | 0.757688 |
Target: 5'- --aGUCcCACACGGCCgUCuGCGGGg- -3' miRNA: 3'- caaUAGuGUGUGCCGGgAG-CGCUCag -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 28806 | 0.7 | 0.76734 |
Target: 5'- ---cUCACGC-CGGCCgagCGCGAGUUu -3' miRNA: 3'- caauAGUGUGuGCCGGga-GCGCUCAG- -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 138290 | 0.69 | 0.847512 |
Target: 5'- ----aCGCgGCACGGCaCCUCGCuGGGUg -3' miRNA: 3'- caauaGUG-UGUGCCG-GGAGCG-CUCAg -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 39452 | 0.68 | 0.870895 |
Target: 5'- ---cUCugGCGCGG-CUUCGCGAGa- -3' miRNA: 3'- caauAGugUGUGCCgGGAGCGCUCag -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 143185 | 0.68 | 0.884687 |
Target: 5'- ---uUCAUACACGuccgcacgagggcGCCCUCGUGuGUUa -3' miRNA: 3'- caauAGUGUGUGC-------------CGGGAGCGCuCAG- -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 22997 | 0.68 | 0.892292 |
Target: 5'- -----aGCACcCGGCCCcCGCGAGa- -3' miRNA: 3'- caauagUGUGuGCCGGGaGCGCUCag -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 123141 | 0.67 | 0.928658 |
Target: 5'- ----aCACGCGCGGCCaggccucCGCGGG-Cg -3' miRNA: 3'- caauaGUGUGUGCCGGga-----GCGCUCaG- -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 10750 | 0.66 | 0.933859 |
Target: 5'- aGUUGUCAC-CACGGCgUUCagguuCGGGUUg -3' miRNA: 3'- -CAAUAGUGuGUGCCGgGAGc----GCUCAG- -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 147810 | 0.66 | 0.943065 |
Target: 5'- --cAUC-CAgGCGGCCCUCcgucucaGCGGGcCg -3' miRNA: 3'- caaUAGuGUgUGCCGGGAG-------CGCUCaG- -5' |
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2743 | 3' | -54.3 | NC_001491.2 | + | 122851 | 0.8 | 0.298646 |
Target: 5'- --gAUUGCGCGCGGCCCUCcGCGAGc- -3' miRNA: 3'- caaUAGUGUGUGCCGGGAG-CGCUCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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