miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2743 5' -55.9 NC_001491.2 + 42620 0.66 0.922073
Target:  5'- cCGAACUCGccaugaaccuuaUGCGGUGCCAgguggcgccauauuCC-CGAGu -3'
miRNA:   3'- -GCUUGAGC------------ACGCCGCGGU--------------GGaGUUCu -5'
2743 5' -55.9 NC_001491.2 + 9518 0.66 0.918148
Target:  5'- aGGGC-CGUGCgccuGGCGCUACCU--AGGu -3'
miRNA:   3'- gCUUGaGCACG----CCGCGGUGGAguUCU- -5'
2743 5' -55.9 NC_001491.2 + 144886 0.66 0.906297
Target:  5'- gGGACgcCGgcuggGCGGCaGCCGCCggggUAGGAg -3'
miRNA:   3'- gCUUGa-GCa----CGCCG-CGGUGGa---GUUCU- -5'
2743 5' -55.9 NC_001491.2 + 7535 0.66 0.906297
Target:  5'- aCGugguACUCGgugagGUGGUGuCCACCUCGc-- -3'
miRNA:   3'- -GCu---UGAGCa----CGCCGC-GGUGGAGUucu -5'
2743 5' -55.9 NC_001491.2 + 100560 0.66 0.904438
Target:  5'- gGAGCUgUGUGUGGCGguguucaaaaaaacCCGgCUCGAGGc -3'
miRNA:   3'- gCUUGA-GCACGCCGC--------------GGUgGAGUUCU- -5'
2743 5' -55.9 NC_001491.2 + 84472 0.66 0.900019
Target:  5'- aGAAaUUGcUGCGGC-CCGCgUCGAGAg -3'
miRNA:   3'- gCUUgAGC-ACGCCGcGGUGgAGUUCU- -5'
2743 5' -55.9 NC_001491.2 + 148726 0.67 0.865236
Target:  5'- uCGGGCUCcaGCaGCGCCACC-CGgcAGAa -3'
miRNA:   3'- -GCUUGAGcaCGcCGCGGUGGaGU--UCU- -5'
2743 5' -55.9 NC_001491.2 + 114945 0.67 0.857632
Target:  5'- uGcGC-CGUGCGcuggccccgggaGCGCCACCUCAGc- -3'
miRNA:   3'- gCuUGaGCACGC------------CGCGGUGGAGUUcu -5'
2743 5' -55.9 NC_001491.2 + 148580 0.68 0.841819
Target:  5'- gCGGugGCUCuGcGCGGCGCCcuCCUCAAa- -3'
miRNA:   3'- -GCU--UGAG-CaCGCCGCGGu-GGAGUUcu -5'
2743 5' -55.9 NC_001491.2 + 1858 0.68 0.825248
Target:  5'- aCGAGCUCGUacgcggGUGGCGCCugGCa-CAGGGc -3'
miRNA:   3'- -GCUUGAGCA------CGCCGCGG--UGgaGUUCU- -5'
2743 5' -55.9 NC_001491.2 + 148783 0.69 0.780902
Target:  5'- gGGGCUCG-GCGGCGgggaGCCUCGGuGAu -3'
miRNA:   3'- gCUUGAGCaCGCCGCgg--UGGAGUU-CU- -5'
2743 5' -55.9 NC_001491.2 + 137676 0.76 0.401904
Target:  5'- gCGGGCgcgggagCGcGCGaGCGCCGCCUCGGGGc -3'
miRNA:   3'- -GCUUGa------GCaCGC-CGCGGUGGAGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.