miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27430 5' -61.6 NC_005869.1 + 5339 0.66 0.298435
Target:  5'- gGGGCgGucUGGGGCUGcUCGguggccaGGGUccucuugaggcugaGGCGGc -3'
miRNA:   3'- -UCCGgU--ACCCCGAC-AGC-------CCCA--------------UCGCC- -5'
27430 5' -61.6 NC_005869.1 + 8560 0.66 0.286805
Target:  5'- uGGGCCA-GGGGCacgggcgcguUGagcUCGGGc-AGCGGg -3'
miRNA:   3'- -UCCGGUaCCCCG----------AC---AGCCCcaUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 8203 0.66 0.279718
Target:  5'- cAGGCgGagGGGGaagGggaggCGGGGcGGCGGg -3'
miRNA:   3'- -UCCGgUa-CCCCga-Ca----GCCCCaUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 7899 0.66 0.279718
Target:  5'- gGGGCggCAUGguGGGCggugGaCGGGGcGGCGGu -3'
miRNA:   3'- -UCCG--GUAC--CCCGa---CaGCCCCaUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 33593 0.67 0.246369
Target:  5'- uGGGCCAUgagagGGGGCUGaUGGGaagaUGGCcGGu -3'
miRNA:   3'- -UCCGGUA-----CCCCGACaGCCCc---AUCG-CC- -5'
27430 5' -61.6 NC_005869.1 + 10088 0.67 0.245737
Target:  5'- uGGUaGUGGGGCUGgaugaccUCGGuGUAGCGc -3'
miRNA:   3'- uCCGgUACCCCGAC-------AGCCcCAUCGCc -5'
27430 5' -61.6 NC_005869.1 + 9090 0.67 0.240108
Target:  5'- gAGGuCCucgaGGGGCgucucgcccucGUCGGGG-AGUGGg -3'
miRNA:   3'- -UCC-GGua--CCCCGa----------CAGCCCCaUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 9944 0.67 0.227984
Target:  5'- uGGGCgGaGGuGGCgg-CGGuGGUGGCGGc -3'
miRNA:   3'- -UCCGgUaCC-CCGacaGCC-CCAUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 189 0.68 0.210774
Target:  5'- uGGaGCCcUGGGGCgGUccuccgcggggCGGGGccgAGCGGc -3'
miRNA:   3'- -UC-CGGuACCCCGaCA-----------GCCCCa--UCGCC- -5'
27430 5' -61.6 NC_005869.1 + 6683 0.68 0.199402
Target:  5'- cGGCCA-GGGcGCgGUCgaaGGGGUugagggguuggccGGCGGg -3'
miRNA:   3'- uCCGGUaCCC-CGaCAG---CCCCA-------------UCGCC- -5'
27430 5' -61.6 NC_005869.1 + 2624 0.69 0.174931
Target:  5'- gAGGCCAUcGGGGCgcagcggCGGGGgaggaAGCa- -3'
miRNA:   3'- -UCCGGUA-CCCCGaca----GCCCCa----UCGcc -5'
27430 5' -61.6 NC_005869.1 + 23728 0.69 0.174931
Target:  5'- gGGGUCAccGGGCg--CGGGG-GGCGGg -3'
miRNA:   3'- -UCCGGUacCCCGacaGCCCCaUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 2076 0.69 0.174931
Target:  5'- cGGCCcgGGGGagcggGUggagaGGGG-AGCGGg -3'
miRNA:   3'- uCCGGuaCCCCga---CAg----CCCCaUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 8400 0.69 0.170277
Target:  5'- uGGCCA-GGGcGCUGUCccaGUGGCGGu -3'
miRNA:   3'- uCCGGUaCCC-CGACAGcccCAUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 17476 0.7 0.156974
Target:  5'- gGGGCUA-GGGGCgg-CGuGGGUgcuggAGCGGg -3'
miRNA:   3'- -UCCGGUaCCCCGacaGC-CCCA-----UCGCC- -5'
27430 5' -61.6 NC_005869.1 + 8321 0.7 0.15027
Target:  5'- cGGGCCAgcuccaccgcggucUGGGGgguagccugcaggagGUCGGGG-GGCGGg -3'
miRNA:   3'- -UCCGGU--------------ACCCCga-------------CAGCCCCaUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 7641 0.7 0.136881
Target:  5'- uAGGCCAgGGGGUccUCGGGGUcguccggcaGGcCGGg -3'
miRNA:   3'- -UCCGGUaCCCCGacAGCCCCA---------UC-GCC- -5'
27430 5' -61.6 NC_005869.1 + 17220 0.71 0.129168
Target:  5'- cGGCaGUGGGGuCUGUaCGGGcagggccaccuccGUGGCGGu -3'
miRNA:   3'- uCCGgUACCCC-GACA-GCCC-------------CAUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 15288 0.73 0.087479
Target:  5'- gGGGCCGgggcgGGGGCgg-CGGcGGcAGCGGa -3'
miRNA:   3'- -UCCGGUa----CCCCGacaGCC-CCaUCGCC- -5'
27430 5' -61.6 NC_005869.1 + 16613 0.74 0.073747
Target:  5'- cGGGCCAccggaaccaccGGGGCgcgCGGGGUGGgGGg -3'
miRNA:   3'- -UCCGGUa----------CCCCGacaGCCCCAUCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.