miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27431 3' -59.3 NC_005869.1 + 16568 0.66 0.375345
Target:  5'- cGGGGcuGGAGGGGcUGGGGGaGGcaCCGg -3'
miRNA:   3'- uCUCU--UCUCCCCuACCUCC-CCucGGC- -5'
27431 3' -59.3 NC_005869.1 + 6722 0.66 0.366533
Target:  5'- cGGGGAAGGGGuGGGU-GAGGGc-GCUGg -3'
miRNA:   3'- -UCUCUUCUCC-CCUAcCUCCCcuCGGC- -5'
27431 3' -59.3 NC_005869.1 + 13152 0.67 0.327861
Target:  5'- uGGGAA-AGcGGGAgGGAGGGGAcucgcucgccuacucGCCGg -3'
miRNA:   3'- uCUCUUcUC-CCCUaCCUCCCCU---------------CGGC- -5'
27431 3' -59.3 NC_005869.1 + 4001 0.67 0.308916
Target:  5'- gGGGGAAGaAGGGGGaGGAGGaaagaagaccauGGAGaCGg -3'
miRNA:   3'- -UCUCUUC-UCCCCUaCCUCC------------CCUCgGC- -5'
27431 3' -59.3 NC_005869.1 + 11522 0.67 0.301272
Target:  5'- gGGAGGGcGAGGaGGAccUGGAGGaGGAGgaGg -3'
miRNA:   3'- -UCUCUU-CUCC-CCU--ACCUCC-CCUCggC- -5'
27431 3' -59.3 NC_005869.1 + 4728 0.67 0.293775
Target:  5'- aGGGGAAGAGuGaGGGcguugcccUGGAacugcaGGGGAGCUGu -3'
miRNA:   3'- -UCUCUUCUC-C-CCU--------ACCU------CCCCUCGGC- -5'
27431 3' -59.3 NC_005869.1 + 20708 0.68 0.279218
Target:  5'- cAGGGAGGAGcGGGAggcgcGGcGGcGGcGGCCGg -3'
miRNA:   3'- -UCUCUUCUC-CCCUa----CCuCC-CC-UCGGC- -5'
27431 3' -59.3 NC_005869.1 + 6602 0.69 0.226708
Target:  5'- uGGuGAAGAGGGcGGgcaGGAGGucGGGGUCGa -3'
miRNA:   3'- -UCuCUUCUCCC-CUa--CCUCC--CCUCGGC- -5'
27431 3' -59.3 NC_005869.1 + 8198 0.7 0.203734
Target:  5'- aAGAGcaggcGGAGGGGGaaggGGAGGcGGGGCgGc -3'
miRNA:   3'- -UCUCu----UCUCCCCUa---CCUCC-CCUCGgC- -5'
27431 3' -59.3 NC_005869.1 + 5329 0.7 0.203734
Target:  5'- uAGAGAAaaauGGGGGaAUGGgaaagaGGGGGAGCUa -3'
miRNA:   3'- -UCUCUUc---UCCCC-UACC------UCCCCUCGGc -5'
27431 3' -59.3 NC_005869.1 + 20954 0.7 0.198315
Target:  5'- cGAGAGGccGGGGUGGAGGGccgcgaGGGCgGc -3'
miRNA:   3'- uCUCUUCucCCCUACCUCCC------CUCGgC- -5'
27431 3' -59.3 NC_005869.1 + 5068 0.7 0.187854
Target:  5'- gGGAGAGGAGGug--GGAGaGGGAGgCGa -3'
miRNA:   3'- -UCUCUUCUCCccuaCCUC-CCCUCgGC- -5'
27431 3' -59.3 NC_005869.1 + 178 0.7 0.186327
Target:  5'- aGGGGAAGGGGuGGAgcccUGGggcgguccuccgcgGGGcGGGGCCGa -3'
miRNA:   3'- -UCUCUUCUCC-CCU----ACC--------------UCC-CCUCGGC- -5'
27431 3' -59.3 NC_005869.1 + 10280 0.71 0.173073
Target:  5'- aGGGcGAAGAuGGGGAggaagaGGAGGGG-GCCc -3'
miRNA:   3'- -UCU-CUUCU-CCCCUa-----CCUCCCCuCGGc -5'
27431 3' -59.3 NC_005869.1 + 10825 0.71 0.168381
Target:  5'- gGGGGAGGAGGGGGaGGAGaugaGGGA-CCu -3'
miRNA:   3'- -UCUCUUCUCCCCUaCCUC----CCCUcGGc -5'
27431 3' -59.3 NC_005869.1 + 1901 0.71 0.167919
Target:  5'- uGGAacAGGAGGaGGAUGGAGGagccgauGGAGCUGg -3'
miRNA:   3'- -UCUc-UUCUCC-CCUACCUCC-------CCUCGGC- -5'
27431 3' -59.3 NC_005869.1 + 2090 0.73 0.113439
Target:  5'- gGGuGGAGAGGGGAgcggGGAggaggcgGGGGGGUCu -3'
miRNA:   3'- -UCuCUUCUCCCCUa---CCU-------CCCCUCGGc -5'
27431 3' -59.3 NC_005869.1 + 3319 0.75 0.079902
Target:  5'- gGGAGggGuguucccuauaaaaGGGGGAUGGGGGuGGAGgCa -3'
miRNA:   3'- -UCUCuuC--------------UCCCCUACCUCC-CCUCgGc -5'
27431 3' -59.3 NC_005869.1 + 11558 0.76 0.071759
Target:  5'- -uGGAGGAGGcGGA-GGAGGaGGAGCUGg -3'
miRNA:   3'- ucUCUUCUCC-CCUaCCUCC-CCUCGGC- -5'
27431 3' -59.3 NC_005869.1 + 7991 0.77 0.063669
Target:  5'- -aGGAAGAGGcGGcgGGugcccucGGGGGAGCCGa -3'
miRNA:   3'- ucUCUUCUCC-CCuaCC-------UCCCCUCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.