miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27432 3' -62.9 NC_005869.1 + 194 0.68 0.179342
Target:  5'- gGCGGaGcCGGCuGGCGg-GAAUUCCCGGg -3'
miRNA:   3'- -CGCC-CaGCCG-CCGCgaCUUGGGGGUC- -5'
27432 3' -62.9 NC_005869.1 + 4885 0.72 0.088124
Target:  5'- cCGGGUUGGUGGUuaGCcccGAGCCCUCGGu -3'
miRNA:   3'- cGCCCAGCCGCCG--CGa--CUUGGGGGUC- -5'
27432 3' -62.9 NC_005869.1 + 6206 0.67 0.2211
Target:  5'- cGCGGGcgauggcuUCGGUGGUGC-GGGCgUCCAu -3'
miRNA:   3'- -CGCCC--------AGCCGCCGCGaCUUGgGGGUc -5'
27432 3' -62.9 NC_005869.1 + 6269 0.69 0.148299
Target:  5'- -aGGGcacuggCGGCGGUGCUGGucgaggaGCUCCCGc -3'
miRNA:   3'- cgCCCa-----GCCGCCGCGACU-------UGGGGGUc -5'
27432 3' -62.9 NC_005869.1 + 6512 0.66 0.257632
Target:  5'- -aGGcGUCGGUGGgGUUGAaggaggagcgGCCUCCGc -3'
miRNA:   3'- cgCC-CAGCCGCCgCGACU----------UGGGGGUc -5'
27432 3' -62.9 NC_005869.1 + 7921 0.76 0.043369
Target:  5'- aCGGGgCGGCGGUGUUGAGCUCCUc- -3'
miRNA:   3'- cGCCCaGCCGCCGCGACUUGGGGGuc -5'
27432 3' -62.9 NC_005869.1 + 8217 0.69 0.156933
Target:  5'- -aGGGgaGGCGGgGCggcGGGCCCUCGGg -3'
miRNA:   3'- cgCCCagCCGCCgCGa--CUUGGGGGUC- -5'
27432 3' -62.9 NC_005869.1 + 8305 0.69 0.156933
Target:  5'- gGUGGGccCGGCGGCGC-GGGCCagcuCCAc -3'
miRNA:   3'- -CGCCCa-GCCGCCGCGaCUUGGg---GGUc -5'
27432 3' -62.9 NC_005869.1 + 8477 0.75 0.049897
Target:  5'- -aGGGUgGcGCGGCGCUcgagcagGAGCCCCCGc -3'
miRNA:   3'- cgCCCAgC-CGCCGCGA-------CUUGGGGGUc -5'
27432 3' -62.9 NC_005869.1 + 10081 0.66 0.232165
Target:  5'- aGCGGGgaagaGGgGGUGCUgauuguggacGAcgcuccugucgcgACCCCCAGc -3'
miRNA:   3'- -CGCCCag---CCgCCGCGA----------CU-------------UGGGGGUC- -5'
27432 3' -62.9 NC_005869.1 + 11097 1.09 0.000109
Target:  5'- aGCGGGUCGGCGGCGCUGAACCCCCAGc -3'
miRNA:   3'- -CGCCCAGCCGCCGCGACUUGGGGGUC- -5'
27432 3' -62.9 NC_005869.1 + 11202 0.79 0.028162
Target:  5'- cGCGGGUCGcGCGGC----AACCCCCAGa -3'
miRNA:   3'- -CGCCCAGC-CGCCGcgacUUGGGGGUC- -5'
27432 3' -62.9 NC_005869.1 + 11771 0.67 0.209941
Target:  5'- aGCGGGcgacgCGGaugcaGGCGCUGccCUCCCuGg -3'
miRNA:   3'- -CGCCCa----GCCg----CCGCGACuuGGGGGuC- -5'
27432 3' -62.9 NC_005869.1 + 12478 0.67 0.226867
Target:  5'- aGCGGGUagggccaguUGGCGGgGUaugGGugCCCCu- -3'
miRNA:   3'- -CGCCCA---------GCCGCCgCGa--CUugGGGGuc -5'
27432 3' -62.9 NC_005869.1 + 12851 0.67 0.226867
Target:  5'- cGCGGccgCGGUGGCGCccaacuacuuuaUGAaugccguccugaACCCCCGc -3'
miRNA:   3'- -CGCCca-GCCGCCGCG------------ACU------------UGGGGGUc -5'
27432 3' -62.9 NC_005869.1 + 15552 0.67 0.199271
Target:  5'- gGCGGuGgaagCGGUGGCGCgccggaggcgGAGCaCCCGGc -3'
miRNA:   3'- -CGCC-Ca---GCCGCCGCGa---------CUUGgGGGUC- -5'
27432 3' -62.9 NC_005869.1 + 15966 0.66 0.238783
Target:  5'- aCGGGU--GCuGGUGCUGGGCacgcgCCCCAGg -3'
miRNA:   3'- cGCCCAgcCG-CCGCGACUUG-----GGGGUC- -5'
27432 3' -62.9 NC_005869.1 + 16483 0.73 0.074458
Target:  5'- uGCGGG-CgGGCGGCGCUGccACCgCCAc -3'
miRNA:   3'- -CGCCCaG-CCGCCGCGACu-UGGgGGUc -5'
27432 3' -62.9 NC_005869.1 + 16682 0.73 0.072387
Target:  5'- aGCGGG-CGGCGGcCGCcGuGCCCCUg- -3'
miRNA:   3'- -CGCCCaGCCGCC-GCGaCuUGGGGGuc -5'
27432 3' -62.9 NC_005869.1 + 16730 0.67 0.199271
Target:  5'- aGCGGGUCucgggaGCGGU-CUGGACgCCCAc -3'
miRNA:   3'- -CGCCCAGc-----CGCCGcGACUUGgGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.