Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 27432 | 3' | -62.9 | NC_005869.1 | + | 22922 | 0.71 | 0.107079 |
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Target: 5'- cGCGGGacCGGgGGUGCUGcaggaaGGCCUCCAa -3' miRNA: 3'- -CGCCCa-GCCgCCGCGAC------UUGGGGGUc -5' |
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| 27432 | 3' | -62.9 | NC_005869.1 | + | 4885 | 0.72 | 0.088124 |
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Target: 5'- cCGGGUUGGUGGUuaGCcccGAGCCCUCGGu -3' miRNA: 3'- cGCCCAGCCGCCG--CGa--CUUGGGGGUC- -5' |
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| 27432 | 3' | -62.9 | NC_005869.1 | + | 30171 | 0.73 | 0.081016 |
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Target: 5'- gGUGGGUggUGGUGGCgGCUGGGCUUCCAc -3' miRNA: 3'- -CGCCCA--GCCGCCG-CGACUUGGGGGUc -5' |
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| 27432 | 3' | -62.9 | NC_005869.1 | + | 16483 | 0.73 | 0.074458 |
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Target: 5'- uGCGGG-CgGGCGGCGCUGccACCgCCAc -3' miRNA: 3'- -CGCCCaG-CCGCCGCGACu-UGGgGGUc -5' |
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| 27432 | 3' | -62.9 | NC_005869.1 | + | 16682 | 0.73 | 0.072387 |
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Target: 5'- aGCGGG-CGGCGGcCGCcGuGCCCCUg- -3' miRNA: 3'- -CGCCCaGCCGCC-GCGaCuUGGGGGuc -5' |
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| 27432 | 3' | -62.9 | NC_005869.1 | + | 18410 | 0.74 | 0.061079 |
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Target: 5'- uGCGGaGgCGGCGGCuGCggcGcACCCCCAGg -3' miRNA: 3'- -CGCC-CaGCCGCCG-CGa--CuUGGGGGUC- -5' |
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| 27432 | 3' | -62.9 | NC_005869.1 | + | 8477 | 0.75 | 0.049897 |
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Target: 5'- -aGGGUgGcGCGGCGCUcgagcagGAGCCCCCGc -3' miRNA: 3'- cgCCCAgC-CGCCGCGA-------CUUGGGGGUc -5' |
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| 27432 | 3' | -62.9 | NC_005869.1 | + | 7921 | 0.76 | 0.043369 |
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Target: 5'- aCGGGgCGGCGGUGUUGAGCUCCUc- -3' miRNA: 3'- cGCCCaGCCGCCGCGACUUGGGGGuc -5' |
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| 27432 | 3' | -62.9 | NC_005869.1 | + | 11202 | 0.79 | 0.028162 |
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Target: 5'- cGCGGGUCGcGCGGC----AACCCCCAGa -3' miRNA: 3'- -CGCCCAGC-CGCCGcgacUUGGGGGUC- -5' |
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| 27432 | 3' | -62.9 | NC_005869.1 | + | 11097 | 1.09 | 0.000109 |
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Target: 5'- aGCGGGUCGGCGGCGCUGAACCCCCAGc -3' miRNA: 3'- -CGCCCAGCCGCCGCGACUUGGGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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