miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27432 5' -55.4 NC_005869.1 + 23414 0.66 0.580301
Target:  5'- cGCgCCCAGGGcgCcGGCCGGCGgcuucaucuGCCg -3'
miRNA:   3'- -UG-GGGUUCUaaGaCCGGUCGCac-------UGG- -5'
27432 5' -55.4 NC_005869.1 + 9817 0.66 0.580301
Target:  5'- uGCCCCAGGccuccugCUGGC-AGCG--GCCg -3'
miRNA:   3'- -UGGGGUUCuaa----GACCGgUCGCacUGG- -5'
27432 5' -55.4 NC_005869.1 + 28680 0.66 0.57917
Target:  5'- aGCCUCAAGAggaccCUGGCCaccgagcAGCcccaGACCg -3'
miRNA:   3'- -UGGGGUUCUaa---GACCGG-------UCGca--CUGG- -5'
27432 5' -55.4 NC_005869.1 + 24576 0.66 0.569007
Target:  5'- gGCCCCGGGAgggcGGCCGcGcCGUcACCg -3'
miRNA:   3'- -UGGGGUUCUaagaCCGGU-C-GCAcUGG- -5'
27432 5' -55.4 NC_005869.1 + 22158 0.66 0.535489
Target:  5'- gGCCCCGAugcggUUGGCCAGgGgcUGGCUc -3'
miRNA:   3'- -UGGGGUUcuaa-GACCGGUCgC--ACUGG- -5'
27432 5' -55.4 NC_005869.1 + 26399 0.68 0.459362
Target:  5'- gACCCCGAGGaccccCUGGCCuaugcccagcugcGGCGccGCCg -3'
miRNA:   3'- -UGGGGUUCUaa---GACCGG-------------UCGCacUGG- -5'
27432 5' -55.4 NC_005869.1 + 566 0.68 0.450116
Target:  5'- aACCCCGAGGUg--GuGCCGGUGcuggaauggGACCc -3'
miRNA:   3'- -UGGGGUUCUAagaC-CGGUCGCa--------CUGG- -5'
27432 5' -55.4 NC_005869.1 + 16839 0.68 0.429945
Target:  5'- cACCCCGAuGGUgcuUGGUCAgGCGcuuUGACCg -3'
miRNA:   3'- -UGGGGUU-CUAag-ACCGGU-CGC---ACUGG- -5'
27432 5' -55.4 NC_005869.1 + 21269 0.68 0.429945
Target:  5'- gGCUCCAGGuugcggCUGGCCucguccagGGCGcccgUGGCCg -3'
miRNA:   3'- -UGGGGUUCuaa---GACCGG--------UCGC----ACUGG- -5'
27432 5' -55.4 NC_005869.1 + 20594 0.69 0.381941
Target:  5'- gGCCCCGGGGcgcggCUGGUggCGGCGggagaagcUGGCCa -3'
miRNA:   3'- -UGGGGUUCUaa---GACCG--GUCGC--------ACUGG- -5'
27432 5' -55.4 NC_005869.1 + 13229 0.69 0.363764
Target:  5'- cGCUCCAGc---CUGGCCAGCGgcGCCg -3'
miRNA:   3'- -UGGGGUUcuaaGACCGGUCGCacUGG- -5'
27432 5' -55.4 NC_005869.1 + 11251 0.7 0.354903
Target:  5'- cCCCCGAuguGAUgCUGGCCcugcAGC-UGACCa -3'
miRNA:   3'- uGGGGUU---CUAaGACCGG----UCGcACUGG- -5'
27432 5' -55.4 NC_005869.1 + 16634 0.7 0.321
Target:  5'- gGCCCCAGGccgUCgUGGCgccgcagcuCAGCGcGGCCg -3'
miRNA:   3'- -UGGGGUUCua-AG-ACCG---------GUCGCaCUGG- -5'
27432 5' -55.4 NC_005869.1 + 13403 0.71 0.297203
Target:  5'- cGCgCCCAGGAgaugGGCCuGCccGUGGCCa -3'
miRNA:   3'- -UG-GGGUUCUaagaCCGGuCG--CACUGG- -5'
27432 5' -55.4 NC_005869.1 + 25296 0.72 0.234072
Target:  5'- -gUCCGAGAUcCUGcGCCAG-GUGGCCa -3'
miRNA:   3'- ugGGGUUCUAaGAC-CGGUCgCACUGG- -5'
27432 5' -55.4 NC_005869.1 + 18434 0.73 0.21568
Target:  5'- cCCCCAGGA---UGGCCGGCGcgGAgCg -3'
miRNA:   3'- uGGGGUUCUaagACCGGUCGCa-CUgG- -5'
27432 5' -55.4 NC_005869.1 + 20839 0.73 0.209831
Target:  5'- aGCCCCAgcgAGAgccauaGGUgGGCGUGGCCg -3'
miRNA:   3'- -UGGGGU---UCUaaga--CCGgUCGCACUGG- -5'
27432 5' -55.4 NC_005869.1 + 25017 0.74 0.177544
Target:  5'- gACCCCAAGGUcCUGGaggagCGGCGcaaGACCg -3'
miRNA:   3'- -UGGGGUUCUAaGACCg----GUCGCa--CUGG- -5'
27432 5' -55.4 NC_005869.1 + 11220 0.76 0.137386
Target:  5'- cGCgCCCGAGAgccgCUGGCUGGUG-GACCu -3'
miRNA:   3'- -UG-GGGUUCUaa--GACCGGUCGCaCUGG- -5'
27432 5' -55.4 NC_005869.1 + 11133 1.11 0.000368
Target:  5'- gACCCCAAGAUUCUGGCCAGCGUGACCc -3'
miRNA:   3'- -UGGGGUUCUAAGACCGGUCGCACUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.