Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27433 | 3' | -58.5 | NC_005869.1 | + | 23077 | 0.77 | 0.057935 |
Target: 5'- aUCCGGGG-GUAGCAGGCCUUCuggaaagccuuGAGCu -3' miRNA: 3'- -AGGUUCCgCGUCGUCCGGAAG-----------CUCGu -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 25344 | 0.66 | 0.384092 |
Target: 5'- gCCAuggGGGUcugGCAGCAGuGCC-UCGAGg- -3' miRNA: 3'- aGGU---UCCG---CGUCGUC-CGGaAGCUCgu -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 12361 | 0.66 | 0.35805 |
Target: 5'- cCCuguGGGgGCuGCAGGCCcccgcuggggagcgCGGGCAc -3' miRNA: 3'- aGGu--UCCgCGuCGUCCGGaa------------GCUCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 24410 | 0.66 | 0.357175 |
Target: 5'- cCCccGGCGCAGCcgcggAGGCCgcCGAgGCGc -3' miRNA: 3'- aGGuuCCGCGUCG-----UCCGGaaGCU-CGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 12088 | 0.67 | 0.339979 |
Target: 5'- cCCAGGacGUGCGGCAGGUgaUCGcccAGCGc -3' miRNA: 3'- aGGUUC--CGCGUCGUCCGgaAGC---UCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 7790 | 0.67 | 0.339979 |
Target: 5'- gCCGAuGGCGCGcuucuGCGGGCa---GAGCAu -3' miRNA: 3'- aGGUU-CCGCGU-----CGUCCGgaagCUCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 7067 | 0.67 | 0.339979 |
Target: 5'- gUCCuGGGCGCAGUAgcgcaggguGGCCUggacgaugUCGuaAGCGu -3' miRNA: 3'- -AGGuUCCGCGUCGU---------CCGGA--------AGC--UCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 12696 | 0.67 | 0.323391 |
Target: 5'- aUCCugcgcuacGUGCAGCAGGCCgu-GAGCc -3' miRNA: 3'- -AGGuuc-----CGCGUCGUCCGGaagCUCGu -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 14990 | 0.69 | 0.243001 |
Target: 5'- cCCGGGGUGCAGCGGGUaaccgucacCGAcGCGc -3' miRNA: 3'- aGGUUCCGCGUCGUCCGgaa------GCU-CGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 7732 | 0.69 | 0.22417 |
Target: 5'- gCCAgaGGGUGUcggugaGGCGGGCCUgcaGGGCGu -3' miRNA: 3'- aGGU--UCCGCG------UCGUCCGGAag-CUCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 8220 | 0.76 | 0.073515 |
Target: 5'- --gGAGGCgggGCGGCGGGCCcUCGGGCGg -3' miRNA: 3'- aggUUCCG---CGUCGUCCGGaAGCUCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 10161 | 0.73 | 0.120937 |
Target: 5'- --aGAGGCGCAGCAGGUgCUgguagcccaCGAGCAg -3' miRNA: 3'- aggUUCCGCGUCGUCCG-GAa--------GCUCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 6882 | 0.71 | 0.160873 |
Target: 5'- gCCGAGGUGCGGCgccugGGGCCggCuGGCGc -3' miRNA: 3'- aGGUUCCGCGUCG-----UCCGGaaGcUCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 9922 | 0.71 | 0.175 |
Target: 5'- cCCGcaggGGGCGCAGCAGcGCCaggUCG-GCc -3' miRNA: 3'- aGGU----UCCGCGUCGUC-CGGa--AGCuCGu -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 10728 | 0.7 | 0.185023 |
Target: 5'- ---cGGGCGCGGC-GGCCccCGAGCGg -3' miRNA: 3'- agguUCCGCGUCGuCCGGaaGCUCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 10962 | 0.7 | 0.185023 |
Target: 5'- cCCAcauGaGCGCGGCcgccuggcccAGGCCUaCGAGCAg -3' miRNA: 3'- aGGUu--C-CGCGUCG----------UCCGGAaGCUCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 17333 | 0.7 | 0.195548 |
Target: 5'- cCCAggGGGUGCAGguGGCUUUCcaaccAGCGu -3' miRNA: 3'- aGGU--UCCGCGUCguCCGGAAGc----UCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 10923 | 1.09 | 0.000213 |
Target: 5'- cUCCAAGGCGCAGCAGGCCUUCGAGCAg -3' miRNA: 3'- -AGGUUCCGCGUCGUCCGGAAGCUCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 25530 | 0.66 | 0.384092 |
Target: 5'- gCCGAGGCcgcggaggccgGCAcGCGGGggcuCCUgcUCGAGCGc -3' miRNA: 3'- aGGUUCCG-----------CGU-CGUCC----GGA--AGCUCGU- -5' |
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27433 | 3' | -58.5 | NC_005869.1 | + | 9042 | 0.66 | 0.384092 |
Target: 5'- gUCCGAGGUGUgcauccAGCGGGCCagcugcUCGucGCu -3' miRNA: 3'- -AGGUUCCGCG------UCGUCCGGa-----AGCu-CGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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