miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27433 5' -56.3 NC_005869.1 + 18961 0.66 0.540503
Target:  5'- ----gUAGAAGGUucggCUGCUgagcACCCUCGGg -3'
miRNA:   3'- gaaagGUCUUCCG----GACGA----UGGGGGCC- -5'
27433 5' -56.3 NC_005869.1 + 27998 0.66 0.536113
Target:  5'- --cUCCGGugacGAGGCCUGCgaagcaacugacgGCcacgcaCCCCGGc -3'
miRNA:   3'- gaaAGGUC----UUCCGGACGa------------UG------GGGGCC- -5'
27433 5' -56.3 NC_005869.1 + 18445 0.66 0.529552
Target:  5'- ---gCCGGcgcgGAGcGCCUGCgccGCCgCCGGg -3'
miRNA:   3'- gaaaGGUC----UUC-CGGACGa--UGGgGGCC- -5'
27433 5' -56.3 NC_005869.1 + 24555 0.66 0.529552
Target:  5'- ----gCGGggGcGCCUucgaGCUGCggCCCCGGg -3'
miRNA:   3'- gaaagGUCuuC-CGGA----CGAUG--GGGGCC- -5'
27433 5' -56.3 NC_005869.1 + 8686 0.66 0.497221
Target:  5'- --gUCCucGAGGCaCUGCUgccagACCCCCa- -3'
miRNA:   3'- gaaAGGucUUCCG-GACGA-----UGGGGGcc -5'
27433 5' -56.3 NC_005869.1 + 24421 0.66 0.48664
Target:  5'- ---gCCGcGGAGGCCgccgagGC-GCCCUCGGu -3'
miRNA:   3'- gaaaGGU-CUUCCGGa-----CGaUGGGGGCC- -5'
27433 5' -56.3 NC_005869.1 + 24660 0.67 0.465807
Target:  5'- cCUUgcgCCGGcgccguccccGGCCUGCgcCCCCCGu -3'
miRNA:   3'- -GAAa--GGUCuu--------CCGGACGauGGGGGCc -5'
27433 5' -56.3 NC_005869.1 + 15619 0.67 0.434462
Target:  5'- -gUUCCAcGAGGCCcaucuguUGCUGCUgCUGGc -3'
miRNA:   3'- gaAAGGUcUUCCGG-------ACGAUGGgGGCC- -5'
27433 5' -56.3 NC_005869.1 + 28487 0.69 0.351755
Target:  5'- --cUCCgAGAcGGuCCUGCUcGCCCCCa- -3'
miRNA:   3'- gaaAGG-UCUuCC-GGACGA-UGGGGGcc -5'
27433 5' -56.3 NC_005869.1 + 24397 0.69 0.343187
Target:  5'- --cUgCAGGAGGCC----GCCCCCGGc -3'
miRNA:   3'- gaaAgGUCUUCCGGacgaUGGGGGCC- -5'
27433 5' -56.3 NC_005869.1 + 2794 0.7 0.294974
Target:  5'- -gUUCCAGAagcugAGGCgCUGUccuUACCCCUGu -3'
miRNA:   3'- gaAAGGUCU-----UCCG-GACG---AUGGGGGCc -5'
27433 5' -56.3 NC_005869.1 + 22297 0.7 0.294974
Target:  5'- ---gCCAgGGAGGCCgcGCUcACCCCCGc -3'
miRNA:   3'- gaaaGGU-CUUCCGGa-CGA-UGGGGGCc -5'
27433 5' -56.3 NC_005869.1 + 11103 0.73 0.208328
Target:  5'- -cUUUguGGAGGCCUuccugcaGC-ACCCCCGGu -3'
miRNA:   3'- gaAAGguCUUCCGGA-------CGaUGGGGGCC- -5'
27433 5' -56.3 NC_005869.1 + 23114 0.74 0.153857
Target:  5'- ---gCUcGAAGGCCUGCUGCgCCuuGGa -3'
miRNA:   3'- gaaaGGuCUUCCGGACGAUG-GGggCC- -5'
27433 5' -56.3 NC_005869.1 + 21673 0.76 0.126028
Target:  5'- ---cCCAGcgGGGGCCUGCaGCCCCCa- -3'
miRNA:   3'- gaaaGGUC--UUCCGGACGaUGGGGGcc -5'
27433 5' -56.3 NC_005869.1 + 22416 0.76 0.115589
Target:  5'- ---aCCAGGAGGCCUGCUACgcguuCCUCGc -3'
miRNA:   3'- gaaaGGUCUUCCGGACGAUG-----GGGGCc -5'
27433 5' -56.3 NC_005869.1 + 10957 0.98 0.002706
Target:  5'- gCUUUCCAGAAGGCCUGCUACCCCgGa -3'
miRNA:   3'- -GAAAGGUCUUCCGGACGAUGGGGgCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.