miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27434 5' -62.2 NC_005869.1 + 10765 1.08 0.000129
Target:  5'- cUGCGCGAGACCCCCGAGCGCGCCAAGa -3'
miRNA:   3'- -ACGCGCUCUGGGGGCUCGCGCGGUUC- -5'
27434 5' -62.2 NC_005869.1 + 28444 0.79 0.028771
Target:  5'- aGUGCGAGACCCagugCGAGCGCuGCCGc- -3'
miRNA:   3'- aCGCGCUCUGGGg---GCUCGCG-CGGUuc -5'
27434 5' -62.2 NC_005869.1 + 10730 0.76 0.045828
Target:  5'- gGCGCGGcGGCCCCCGAGCG-GCa--- -3'
miRNA:   3'- aCGCGCU-CUGGGGGCUCGCgCGguuc -5'
27434 5' -62.2 NC_005869.1 + 18244 0.75 0.051447
Target:  5'- gGCGCGAGaugGCCauggCCGAGCGCGUCGGu -3'
miRNA:   3'- aCGCGCUC---UGGg---GGCUCGCGCGGUUc -5'
27434 5' -62.2 NC_005869.1 + 10954 0.72 0.093747
Target:  5'- gGCGCG-GGCCCacaUGAGCGCgGCCGc- -3'
miRNA:   3'- aCGCGCuCUGGGg--GCUCGCG-CGGUuc -5'
27434 5' -62.2 NC_005869.1 + 10490 0.72 0.095347
Target:  5'- gGCGCGGGGCCCaagccuggcugaaCGAGCGCaagaucagcuGCCAGc -3'
miRNA:   3'- aCGCGCUCUGGGg------------GCUCGCG----------CGGUUc -5'
27434 5' -62.2 NC_005869.1 + 16544 0.72 0.102007
Target:  5'- gGCGCGAGGCgCaCGcGGCGCGCgCGGGg -3'
miRNA:   3'- aCGCGCUCUGgGgGC-UCGCGCG-GUUC- -5'
27434 5' -62.2 NC_005869.1 + 25800 0.71 0.104616
Target:  5'- gUGCGCuGGGACCCCCcgcccgaGGGCcCGCCGc- -3'
miRNA:   3'- -ACGCG-CUCUGGGGG-------CUCGcGCGGUuc -5'
27434 5' -62.2 NC_005869.1 + 23398 0.71 0.10789
Target:  5'- aGCGCGucGCCCCCuccGCGC-CCAGGg -3'
miRNA:   3'- aCGCGCucUGGGGGcu-CGCGcGGUUC- -5'
27434 5' -62.2 NC_005869.1 + 5895 0.71 0.117313
Target:  5'- aUG-GCGAGGCCugCUCGAGCGUGUgGAGa -3'
miRNA:   3'- -ACgCGCUCUGG--GGGCUCGCGCGgUUC- -5'
27434 5' -62.2 NC_005869.1 + 24551 0.7 0.127499
Target:  5'- cUGCGCGGGggcGCCUUCGAGCuGCGgccCCGGGa -3'
miRNA:   3'- -ACGCGCUC---UGGGGGCUCG-CGC---GGUUC- -5'
27434 5' -62.2 NC_005869.1 + 11958 0.7 0.127499
Target:  5'- gUGCGCGAGgcggGCUCCCG-GCGacgGCCAGc -3'
miRNA:   3'- -ACGCGCUC----UGGGGGCuCGCg--CGGUUc -5'
27434 5' -62.2 NC_005869.1 + 18469 0.7 0.134738
Target:  5'- cGC-CGGGugCUCCGccuccGGCGCGCCAc- -3'
miRNA:   3'- aCGcGCUCugGGGGC-----UCGCGCGGUuc -5'
27434 5' -62.2 NC_005869.1 + 9619 0.7 0.138498
Target:  5'- gGCGCcucGGcGGCCUCCGcGGCuGCGCCGGGg -3'
miRNA:   3'- aCGCG---CU-CUGGGGGC-UCG-CGCGGUUC- -5'
27434 5' -62.2 NC_005869.1 + 27974 0.7 0.142354
Target:  5'- aGCGCGAGACgCCgGAGaCGCGgacuCCGGu -3'
miRNA:   3'- aCGCGCUCUGgGGgCUC-GCGC----GGUUc -5'
27434 5' -62.2 NC_005869.1 + 24423 0.69 0.146307
Target:  5'- cGCG-GAGGCCgCCGAG-GCGCCc-- -3'
miRNA:   3'- aCGCgCUCUGGgGGCUCgCGCGGuuc -5'
27434 5' -62.2 NC_005869.1 + 18647 0.69 0.150361
Target:  5'- cGCGCGcGGCCCuCCGAcgucgacgaugGCGgCGCCGGc -3'
miRNA:   3'- aCGCGCuCUGGG-GGCU-----------CGC-GCGGUUc -5'
27434 5' -62.2 NC_005869.1 + 16467 0.68 0.19166
Target:  5'- gGCGgGGGACCgCCGcugcgggcgggcGGCGCuGCCAc- -3'
miRNA:   3'- aCGCgCUCUGGgGGC------------UCGCG-CGGUuc -5'
27434 5' -62.2 NC_005869.1 + 15200 0.68 0.196819
Target:  5'- cGCGCGcGGACCCCCaccuGGgGgGCCuuuGGa -3'
miRNA:   3'- aCGCGC-UCUGGGGGc---UCgCgCGGu--UC- -5'
27434 5' -62.2 NC_005869.1 + 11749 0.68 0.201565
Target:  5'- aGCGCGGccucccuGGCgCCCGAGCGgGCg--- -3'
miRNA:   3'- aCGCGCU-------CUGgGGGCUCGCgCGguuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.