miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27435 3' -57.3 NC_005869.1 + 2549 0.66 0.425345
Target:  5'- cGCUGCCacgAGCUGagcgaGCCgguggcUCGGCGCuGCGc -3'
miRNA:   3'- uCGACGG---UCGAC-----UGGa-----AGUCGUG-CGU- -5'
27435 3' -57.3 NC_005869.1 + 20049 0.66 0.396145
Target:  5'- uGCUaGCCGGUcaGGCCUcUCAGCucaACGCGg -3'
miRNA:   3'- uCGA-CGGUCGa-CUGGA-AGUCG---UGCGU- -5'
27435 3' -57.3 NC_005869.1 + 18466 0.67 0.368268
Target:  5'- cGCcGCCGGgUGcuccGCCUcCGGCGCGCc -3'
miRNA:   3'- uCGaCGGUCgAC----UGGAaGUCGUGCGu -5'
27435 3' -57.3 NC_005869.1 + 21275 0.67 0.35928
Target:  5'- aGGUUG-CGGCUGGCCUcgucCAGgGCGCc -3'
miRNA:   3'- -UCGACgGUCGACUGGAa---GUCgUGCGu -5'
27435 3' -57.3 NC_005869.1 + 8933 0.68 0.324881
Target:  5'- uGUaGaCCAGCUGGCCgUCGGCgucccgcgcGCGCAu -3'
miRNA:   3'- uCGaC-GGUCGACUGGaAGUCG---------UGCGU- -5'
27435 3' -57.3 NC_005869.1 + 12654 0.68 0.316673
Target:  5'- cGGCUGCCGGCggcguaugcccUGACCgccgaGGaggaGCGCAu -3'
miRNA:   3'- -UCGACGGUCG-----------ACUGGaag--UCg---UGCGU- -5'
27435 3' -57.3 NC_005869.1 + 11392 0.68 0.308622
Target:  5'- aAGCUGCUgguGCUGGCCgacaaccUgGGCAUGUAc -3'
miRNA:   3'- -UCGACGGu--CGACUGGa------AgUCGUGCGU- -5'
27435 3' -57.3 NC_005869.1 + 33651 0.68 0.285412
Target:  5'- gGGCgGCCGccGCgGACCUcUCAGCGCGa- -3'
miRNA:   3'- -UCGaCGGU--CGaCUGGA-AGUCGUGCgu -5'
27435 3' -57.3 NC_005869.1 + 23523 0.69 0.249825
Target:  5'- cAGCUGgCAGCUGAUCUugcgcucguUCAGcCAgGCu -3'
miRNA:   3'- -UCGACgGUCGACUGGA---------AGUC-GUgCGu -5'
27435 3' -57.3 NC_005869.1 + 12195 0.7 0.212044
Target:  5'- gAGCgggGCCAGgaGAgCUaccugggguuccUCAGCGCGCu -3'
miRNA:   3'- -UCGa--CGGUCgaCUgGA------------AGUCGUGCGu -5'
27435 3' -57.3 NC_005869.1 + 22888 0.71 0.206247
Target:  5'- uGCUGCgcgaucagcagCAGCUGcGCggUCAGCGCGCGg -3'
miRNA:   3'- uCGACG-----------GUCGAC-UGgaAGUCGUGCGU- -5'
27435 3' -57.3 NC_005869.1 + 11152 0.71 0.200587
Target:  5'- cAGCUGCU-GCUGAUCgcgCAGCACuGCc -3'
miRNA:   3'- -UCGACGGuCGACUGGaa-GUCGUG-CGu -5'
27435 3' -57.3 NC_005869.1 + 13375 0.72 0.169402
Target:  5'- cAGCaGCCGGCUGuucACCUggcGCACGCGc -3'
miRNA:   3'- -UCGaCGGUCGAC---UGGAaguCGUGCGU- -5'
27435 3' -57.3 NC_005869.1 + 24221 0.72 0.15594
Target:  5'- cGCUGCCAGCaggaggccuggggcaUGGCCgaccgcauccgccugCAGCGCGCc -3'
miRNA:   3'- uCGACGGUCG---------------ACUGGaa-------------GUCGUGCGu -5'
27435 3' -57.3 NC_005869.1 + 2612 0.72 0.155494
Target:  5'- aAGCUGgCGGCggaGGCCaUCGGgGCGCAg -3'
miRNA:   3'- -UCGACgGUCGa--CUGGaAGUCgUGCGU- -5'
27435 3' -57.3 NC_005869.1 + 10527 1.08 0.000263
Target:  5'- cAGCUGCCAGCUGACCUUCAGCACGCAa -3'
miRNA:   3'- -UCGACGGUCGACUGGAAGUCGUGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.