miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27435 5' -55.3 NC_005869.1 + 17395 0.66 0.587733
Target:  5'- gGCUGACGGcGGUGGugccccccacCCCGCgcgCCccgGUg -3'
miRNA:   3'- -CGACUGUCaCUACC----------GGGCGaa-GGa--CG- -5'
27435 5' -55.3 NC_005869.1 + 9211 0.66 0.553864
Target:  5'- --gGGCGGcGAUGGCCUcgGCcaccgCCUGCc -3'
miRNA:   3'- cgaCUGUCaCUACCGGG--CGaa---GGACG- -5'
27435 5' -55.3 NC_005869.1 + 25724 0.66 0.542696
Target:  5'- ---cGCGGUGGagcUGGCCCGCgccgCCggGCc -3'
miRNA:   3'- cgacUGUCACU---ACCGGGCGaa--GGa-CG- -5'
27435 5' -55.3 NC_005869.1 + 23843 0.67 0.524989
Target:  5'- cGCUGAcCAGgGGcuUGGCacgcgcgcgcuuccgCCGCU-CCUGCa -3'
miRNA:   3'- -CGACU-GUCaCU--ACCG---------------GGCGAaGGACG- -5'
27435 5' -55.3 NC_005869.1 + 23645 0.67 0.520596
Target:  5'- uCUGcACAGccaGAuccaUGGCCCGCUgccacUUCUGCu -3'
miRNA:   3'- cGAC-UGUCa--CU----ACCGGGCGA-----AGGACG- -5'
27435 5' -55.3 NC_005869.1 + 11233 0.67 0.520596
Target:  5'- cGCUGGC--UGGUGGaCCUGgUgaaCCUGCu -3'
miRNA:   3'- -CGACUGucACUACC-GGGCgAa--GGACG- -5'
27435 5' -55.3 NC_005869.1 + 12259 0.67 0.514034
Target:  5'- cGCaGACGGaGGUGuuCCGCUcggggccgcacaccuUCCUGCa -3'
miRNA:   3'- -CGaCUGUCaCUACcgGGCGA---------------AGGACG- -5'
27435 5' -55.3 NC_005869.1 + 18422 0.67 0.498857
Target:  5'- gGCUG-CGGcgcacccccagGAUGGCCgGCgcggagcgCCUGCg -3'
miRNA:   3'- -CGACuGUCa----------CUACCGGgCGaa------GGACG- -5'
27435 5' -55.3 NC_005869.1 + 9831 0.67 0.467038
Target:  5'- uGCUGGCAGcggccGAUGuCCUugaGCUgcUCCUGCa -3'
miRNA:   3'- -CGACUGUCa----CUACcGGG---CGA--AGGACG- -5'
27435 5' -55.3 NC_005869.1 + 9562 0.67 0.467038
Target:  5'- gGCgUGGCGGggGAgaagaGGgCCGCUUCCagGCg -3'
miRNA:   3'- -CG-ACUGUCa-CUa----CCgGGCGAAGGa-CG- -5'
27435 5' -55.3 NC_005869.1 + 5444 0.68 0.456665
Target:  5'- cGgUGGCAGcGGcggGGCgCGgUUCCUGCu -3'
miRNA:   3'- -CgACUGUCaCUa--CCGgGCgAAGGACG- -5'
27435 5' -55.3 NC_005869.1 + 26364 0.68 0.436299
Target:  5'- aGCUGGCGcagGAgcggGGCCC-CggCCUGCc -3'
miRNA:   3'- -CGACUGUca-CUa---CCGGGcGaaGGACG- -5'
27435 5' -55.3 NC_005869.1 + 33608 0.68 0.426314
Target:  5'- gGCUGAUGGgaaGAUGGCCgGUgacUCCUcucGCc -3'
miRNA:   3'- -CGACUGUCa--CUACCGGgCGa--AGGA---CG- -5'
27435 5' -55.3 NC_005869.1 + 7667 0.69 0.397195
Target:  5'- --cGGCAGgccggGGcCCCGCU-CCUGCg -3'
miRNA:   3'- cgaCUGUCacua-CC-GGGCGAaGGACG- -5'
27435 5' -55.3 NC_005869.1 + 9960 0.69 0.387776
Target:  5'- cGCUcGGcCAG-GAUGGCCUGCgcaugCgCUGCa -3'
miRNA:   3'- -CGA-CU-GUCaCUACCGGGCGaa---G-GACG- -5'
27435 5' -55.3 NC_005869.1 + 17088 0.69 0.378506
Target:  5'- gGCacgGGCGGUGGUGGCCCGgagCacggGCa -3'
miRNA:   3'- -CGa--CUGUCACUACCGGGCgaaGga--CG- -5'
27435 5' -55.3 NC_005869.1 + 26178 0.71 0.309845
Target:  5'- cGCUGcaGGUGGUGGCCguccagaGCccgCCUGCa -3'
miRNA:   3'- -CGACugUCACUACCGGg------CGaa-GGACG- -5'
27435 5' -55.3 NC_005869.1 + 10562 1.13 0.00024
Target:  5'- uGCUGACAGUGAUGGCCCGCUUCCUGCu -3'
miRNA:   3'- -CGACUGUCACUACCGGGCGAAGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.