miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27436 3' -61.1 NC_005869.1 + 1625 0.66 0.310668
Target:  5'- aGCUGGcaGCGGugaAGGuGCG-GGAGGGCu -3'
miRNA:   3'- gCGACCucCGCC---UCC-UGCuCCUCCUG- -5'
27436 3' -61.1 NC_005869.1 + 9555 0.66 0.310668
Target:  5'- cCGCggcGGcguGGCGGGGGA-GAaGAGGGCc -3'
miRNA:   3'- -GCGa--CCu--CCGCCUCCUgCUcCUCCUG- -5'
27436 3' -61.1 NC_005869.1 + 8593 0.66 0.309905
Target:  5'- aGCgGGAGGUGGucgcGGcgcagacGCGAGGcguGGGCg -3'
miRNA:   3'- gCGaCCUCCGCCu---CC-------UGCUCCu--CCUG- -5'
27436 3' -61.1 NC_005869.1 + 2688 0.66 0.303105
Target:  5'- gGCagagGGAcGCGGAgcgGGAgGAGGAGaGGCa -3'
miRNA:   3'- gCGa---CCUcCGCCU---CCUgCUCCUC-CUG- -5'
27436 3' -61.1 NC_005869.1 + 10929 0.66 0.303105
Target:  5'- uGgaGGAGGCGGGGGgagugaGCGcGGcgcGGGCc -3'
miRNA:   3'- gCgaCCUCCGCCUCC------UGCuCCu--CCUG- -5'
27436 3' -61.1 NC_005869.1 + 6712 0.66 0.303105
Target:  5'- gGUUGGccGGCGGggaagGGGugGGuGAGGGCg -3'
miRNA:   3'- gCGACCu-CCGCC-----UCCugCUcCUCCUG- -5'
27436 3' -61.1 NC_005869.1 + 8140 0.66 0.295685
Target:  5'- gCGgaGGaAGGCGGAGGuccagagacCGGGGgucagcuugaAGGGCg -3'
miRNA:   3'- -GCgaCC-UCCGCCUCCu--------GCUCC----------UCCUG- -5'
27436 3' -61.1 NC_005869.1 + 5494 0.66 0.288406
Target:  5'- aGUUGGccAGGCGGAccauGGCGgugagcAGGAGGAUg -3'
miRNA:   3'- gCGACC--UCCGCCUc---CUGC------UCCUCCUG- -5'
27436 3' -61.1 NC_005869.1 + 11749 0.66 0.288406
Target:  5'- aGCgGGcaaAGGCGGcgAGGAaGAGGAGG-Ca -3'
miRNA:   3'- gCGaCC---UCCGCC--UCCUgCUCCUCCuG- -5'
27436 3' -61.1 NC_005869.1 + 15478 0.66 0.288406
Target:  5'- -cCUGGGcGGCGGcGGGCGcuuGGcGGGACg -3'
miRNA:   3'- gcGACCU-CCGCCuCCUGCu--CC-UCCUG- -5'
27436 3' -61.1 NC_005869.1 + 5235 0.66 0.28625
Target:  5'- uGCUGcgugaguacggaacGAGGCGGuGGGCGucgagcggguGGAGGGu -3'
miRNA:   3'- gCGAC--------------CUCCGCCuCCUGCu---------CCUCCUg -5'
27436 3' -61.1 NC_005869.1 + 3040 0.66 0.28127
Target:  5'- aGCgGGAGGUGGugcugcacaAGcGGCG-GGAGGAg -3'
miRNA:   3'- gCGaCCUCCGCC---------UC-CUGCuCCUCCUg -5'
27436 3' -61.1 NC_005869.1 + 8190 0.67 0.274274
Target:  5'- -cCUGGgugaagagcAGGCGGAGGGgGAaGGGGaGGCg -3'
miRNA:   3'- gcGACC---------UCCGCCUCCUgCU-CCUC-CUG- -5'
27436 3' -61.1 NC_005869.1 + 11724 0.67 0.267418
Target:  5'- aGCUGG-GGCGGcGGcGGCGGGGGuGAg -3'
miRNA:   3'- gCGACCuCCGCC-UC-CUGCUCCUcCUg -5'
27436 3' -61.1 NC_005869.1 + 24291 0.67 0.260701
Target:  5'- cCGCcgGGAcGaGGAGGAgcagGAGGAGGACu -3'
miRNA:   3'- -GCGa-CCUcCgCCUCCUg---CUCCUCCUG- -5'
27436 3' -61.1 NC_005869.1 + 687 0.67 0.254123
Target:  5'- gGCUGGAcaguguggacgaGGUGGAGGugauugugacUGAGGGGGGu -3'
miRNA:   3'- gCGACCU------------CCGCCUCCu---------GCUCCUCCUg -5'
27436 3' -61.1 NC_005869.1 + 2087 0.67 0.247681
Target:  5'- aGCgGGuGGagaGGGGaGCGGGGAGGAg -3'
miRNA:   3'- gCGaCCuCCg--CCUCcUGCUCCUCCUg -5'
27436 3' -61.1 NC_005869.1 + 10193 0.67 0.247681
Target:  5'- aGgUGG-GGCGGAGGguaGAGGuagaGGGGCc -3'
miRNA:   3'- gCgACCuCCGCCUCCug-CUCC----UCCUG- -5'
27436 3' -61.1 NC_005869.1 + 26414 0.67 0.247681
Target:  5'- -cCUcGAGGaacuGGAGGAgGAGGAGGAa -3'
miRNA:   3'- gcGAcCUCCg---CCUCCUgCUCCUCCUg -5'
27436 3' -61.1 NC_005869.1 + 7404 0.67 0.241375
Target:  5'- uCGC-GGcgcGGGCGGAaGGCGGGGuuGGGCa -3'
miRNA:   3'- -GCGaCC---UCCGCCUcCUGCUCCu-CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.