miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27437 3' -67.3 NC_005869.1 + 20729 0.7 0.067652
Target:  5'- gCGGCgGCgGCCGGcGGCGGCg-CCUGg -3'
miRNA:   3'- -GCCGaCG-CGGCCcCCGCCGgaGGACg -5'
27437 3' -67.3 NC_005869.1 + 16613 0.71 0.058889
Target:  5'- uGGCUccGCGCCGGgcGGGcCGGCC-CCagGCc -3'
miRNA:   3'- gCCGA--CGCGGCC--CCC-GCCGGaGGa-CG- -5'
27437 3' -67.3 NC_005869.1 + 15198 0.71 0.058889
Target:  5'- gGGcCUGCGCuccauguaCGGGGGCGcccGCCgCCUGUc -3'
miRNA:   3'- gCC-GACGCG--------GCCCCCGC---CGGaGGACG- -5'
27437 3' -67.3 NC_005869.1 + 18673 0.71 0.057273
Target:  5'- uGGCgGCGCCGGcggcGGGUGGCg-CCgGCg -3'
miRNA:   3'- gCCGaCGCGGCC----CCCGCCGgaGGaCG- -5'
27437 3' -67.3 NC_005869.1 + 27371 0.72 0.049819
Target:  5'- cCGGCaUGCaauuaGCCGGGGGCGGagcCCUcGCa -3'
miRNA:   3'- -GCCG-ACG-----CGGCCCCCGCCggaGGA-CG- -5'
27437 3' -67.3 NC_005869.1 + 23722 0.72 0.048445
Target:  5'- gGGCUcggggucaccggGCGCgGGGGGCGGgcccCCUCCUc- -3'
miRNA:   3'- gCCGA------------CGCGgCCCCCGCC----GGAGGAcg -5'
27437 3' -67.3 NC_005869.1 + 24546 0.72 0.048445
Target:  5'- cCGcGCUGCG-CGGGGGCG-CCUUcgagCUGCg -3'
miRNA:   3'- -GC-CGACGCgGCCCCCGCcGGAG----GACG- -5'
27437 3' -67.3 NC_005869.1 + 16666 0.72 0.045809
Target:  5'- gCGGCcgcgGCGCuggagCGGGcGGCGGCCgccgugccCCUGCc -3'
miRNA:   3'- -GCCGa---CGCG-----GCCC-CCGCCGGa-------GGACG- -5'
27437 3' -67.3 NC_005869.1 + 17857 0.74 0.031785
Target:  5'- gCGGCgguacCGCCGGGGGCcgaugagggguGGCaUCCUGCc -3'
miRNA:   3'- -GCCGac---GCGGCCCCCG-----------CCGgAGGACG- -5'
27437 3' -67.3 NC_005869.1 + 5447 0.74 0.030901
Target:  5'- uGGCaGCGgCGGGGcGCGG-UUCCUGCu -3'
miRNA:   3'- gCCGaCGCgGCCCC-CGCCgGAGGACG- -5'
27437 3' -67.3 NC_005869.1 + 17486 0.75 0.025354
Target:  5'- gCGGCguggGUGCUGGagcGGGCGGCuccaccaccacCUCCUGCa -3'
miRNA:   3'- -GCCGa---CGCGGCC---CCCGCCG-----------GAGGACG- -5'
27437 3' -67.3 NC_005869.1 + 11731 0.77 0.017044
Target:  5'- gCGGCgGCGgCGGGGGUgagcgcGGCCUCCcugGCg -3'
miRNA:   3'- -GCCGaCGCgGCCCCCG------CCGGAGGa--CG- -5'
27437 3' -67.3 NC_005869.1 + 9637 1.1 0.00003
Target:  5'- gCGGCUGCGCCGGGGGCGGCCUCCUGCa -3'
miRNA:   3'- -GCCGACGCGGCCCCCGCCGGAGGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.