miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27437 5' -56.9 NC_005869.1 + 19155 0.66 0.478329
Target:  5'- gGCGCAGGAggaucUGGUuCUCcGGgaaGCGGUu -3'
miRNA:   3'- -CGCGUCCU-----ACCAuGAGaCCg--CGUCGu -5'
27437 5' -56.9 NC_005869.1 + 9372 0.66 0.447318
Target:  5'- gGCGCAGGccGGggACggcgCcGGCGCAaggGCAg -3'
miRNA:   3'- -CGCGUCCuaCCa-UGa---GaCCGCGU---CGU- -5'
27437 5' -56.9 NC_005869.1 + 5657 0.67 0.410666
Target:  5'- cCGCAGGAcGGccucggaggaccacaUCUGGCGCuGCAc -3'
miRNA:   3'- cGCGUCCUaCCaug------------AGACCGCGuCGU- -5'
27437 5' -56.9 NC_005869.1 + 5417 0.67 0.406816
Target:  5'- gGCGCAGGGUcccacauaggugaGGgGCggUGGCaGCGGCGg -3'
miRNA:   3'- -CGCGUCCUA-------------CCaUGagACCG-CGUCGU- -5'
27437 5' -56.9 NC_005869.1 + 8450 0.67 0.397292
Target:  5'- cCGUccuGGGUGGUGCcCuggaggcggagggUGGCGCGGCGc -3'
miRNA:   3'- cGCGu--CCUACCAUGaG-------------ACCGCGUCGU- -5'
27437 5' -56.9 NC_005869.1 + 9531 0.67 0.388843
Target:  5'- gGCGCAGGuuccGUuCUcCUGGCGCcGCGg -3'
miRNA:   3'- -CGCGUCCuac-CAuGA-GACCGCGuCGU- -5'
27437 5' -56.9 NC_005869.1 + 11378 0.68 0.370495
Target:  5'- uGCGCGcGGUGGUgaaGCUgCUGGUGCuGGCc -3'
miRNA:   3'- -CGCGUcCUACCA---UGA-GACCGCG-UCGu -5'
27437 5' -56.9 NC_005869.1 + 8590 0.68 0.361546
Target:  5'- gGCaGCGGGA-GGUGgUCgcGGCGCAGaCGc -3'
miRNA:   3'- -CG-CGUCCUaCCAUgAGa-CCGCGUC-GU- -5'
27437 5' -56.9 NC_005869.1 + 9403 0.68 0.352748
Target:  5'- uGCGCGucGGcucGUGGgcggUUGGCGCGGCAg -3'
miRNA:   3'- -CGCGU--CC---UACCaugaGACCGCGUCGU- -5'
27437 5' -56.9 NC_005869.1 + 19686 0.68 0.344103
Target:  5'- -gGCGGGAgaaGGUGaagucgaUGGCGCAGCc -3'
miRNA:   3'- cgCGUCCUa--CCAUgag----ACCGCGUCGu -5'
27437 5' -56.9 NC_005869.1 + 3619 0.69 0.314254
Target:  5'- aGCGCGGaGGUGGgcaugaugcggcagGCgCUGGCGgAGCu -3'
miRNA:   3'- -CGCGUC-CUACCa-------------UGaGACCGCgUCGu -5'
27437 5' -56.9 NC_005869.1 + 9760 0.69 0.311061
Target:  5'- cGCGCAGGAgGGUGaggUCUuugcggccGGCGCGcuGCAg -3'
miRNA:   3'- -CGCGUCCUaCCAUg--AGA--------CCGCGU--CGU- -5'
27437 5' -56.9 NC_005869.1 + 24099 0.69 0.311061
Target:  5'- aGCGCGuGGUGGccgAC-CUGGCGCuGCu -3'
miRNA:   3'- -CGCGUcCUACCa--UGaGACCGCGuCGu -5'
27437 5' -56.9 NC_005869.1 + 17816 0.69 0.310266
Target:  5'- cGCGguGGGuuccgcgUGGcGC-CUcGGCGCAGCGg -3'
miRNA:   3'- -CGCguCCU-------ACCaUGaGA-CCGCGUCGU- -5'
27437 5' -56.9 NC_005869.1 + 6866 0.69 0.28865
Target:  5'- gGCGCgAGGAgguucggccgaGGUGCggcgccuggggccggCUGGCGCGGUAg -3'
miRNA:   3'- -CGCG-UCCUa----------CCAUGa--------------GACCGCGUCGU- -5'
27437 5' -56.9 NC_005869.1 + 7716 0.69 0.2879
Target:  5'- uCGCGGGAgugGGUucCUCUGGCagAGCAu -3'
miRNA:   3'- cGCGUCCUa--CCAu-GAGACCGcgUCGU- -5'
27437 5' -56.9 NC_005869.1 + 10695 0.76 0.105352
Target:  5'- cGCGCgAGGAggGGgaggGC-CUGGCGCGGCu -3'
miRNA:   3'- -CGCG-UCCUa-CCa---UGaGACCGCGUCGu -5'
27437 5' -56.9 NC_005869.1 + 11855 0.79 0.05993
Target:  5'- gGUGCucuGGAUGGcGCUCUuGCGCAGCAg -3'
miRNA:   3'- -CGCGu--CCUACCaUGAGAcCGCGUCGU- -5'
27437 5' -56.9 NC_005869.1 + 9671 1.1 0.000249
Target:  5'- gGCGCAGGAUGGUACUCUGGCGCAGCAg -3'
miRNA:   3'- -CGCGUCCUACCAUGAGACCGCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.