miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27438 5' -55.6 NC_005869.1 + 719 0.66 0.536633
Target:  5'- ---aGCCCGGucuGCUGUuggcugcgggugagAGGCCUCCg -3'
miRNA:   3'- cgaaCGGGCUcu-CGACA--------------UCUGGAGGg -5'
27438 5' -55.6 NC_005869.1 + 19237 0.66 0.528946
Target:  5'- ---gGCCUGGGuGUUGUAGAaggCCCg -3'
miRNA:   3'- cgaaCGGGCUCuCGACAUCUggaGGG- -5'
27438 5' -55.6 NC_005869.1 + 30345 0.66 0.528946
Target:  5'- gGCcgugGCCCGc-AGCUGUAucuccaccACCUCCCg -3'
miRNA:   3'- -CGaa--CGGGCucUCGACAUc-------UGGAGGG- -5'
27438 5' -55.6 NC_005869.1 + 9636 0.67 0.507217
Target:  5'- cGCggcUGCgCCGGGGGC----GGCCUCCUg -3'
miRNA:   3'- -CGa--ACG-GGCUCUCGacauCUGGAGGG- -5'
27438 5' -55.6 NC_005869.1 + 10881 0.67 0.485876
Target:  5'- aGCUggaCCGGGAGCg--AGugCUCCa -3'
miRNA:   3'- -CGAacgGGCUCUCGacaUCugGAGGg -5'
27438 5' -55.6 NC_005869.1 + 30682 0.68 0.434523
Target:  5'- aGCUUcCCCGuGGGGCUGcauGCCUCCa -3'
miRNA:   3'- -CGAAcGGGC-UCUCGACaucUGGAGGg -5'
27438 5' -55.6 NC_005869.1 + 25816 0.69 0.399559
Target:  5'- ---cGCCCGAGGGCccgccgccccGCCUCCCc -3'
miRNA:   3'- cgaaCGGGCUCUCGacauc-----UGGAGGG- -5'
27438 5' -55.6 NC_005869.1 + 7077 0.7 0.3336
Target:  5'- aGCUUcugcGUCCGAGAGCgugcGUuccagcuuGGCCUCCUc -3'
miRNA:   3'- -CGAA----CGGGCUCUCGa---CAu-------CUGGAGGG- -5'
27438 5' -55.6 NC_005869.1 + 12353 0.7 0.325322
Target:  5'- cCUgcgGCCCcuguGGGGGCUGcAGGCC-CCCg -3'
miRNA:   3'- cGAa--CGGG----CUCUCGACaUCUGGaGGG- -5'
27438 5' -55.6 NC_005869.1 + 12900 0.71 0.29299
Target:  5'- cGCUggcUGCCCucgGAGGGCuucuucaccggcgUGUAuGACUUCCCg -3'
miRNA:   3'- -CGA---ACGGG---CUCUCG-------------ACAU-CUGGAGGG- -5'
27438 5' -55.6 NC_005869.1 + 11218 0.73 0.225368
Target:  5'- gGCgcGCCCGAGAGCcgcuggcugGUGGACCUggugaaCCUg -3'
miRNA:   3'- -CGaaCGGGCUCUCGa--------CAUCUGGA------GGG- -5'
27438 5' -55.6 NC_005869.1 + 16757 0.73 0.219328
Target:  5'- ---cGCCCGAGGuGCUGcccaGCCUCCCc -3'
miRNA:   3'- cgaaCGGGCUCU-CGACauc-UGGAGGG- -5'
27438 5' -55.6 NC_005869.1 + 7561 0.75 0.157106
Target:  5'- ---aGCCCGAGAuGUuguggcccacgaUGUAGACCUCCa -3'
miRNA:   3'- cgaaCGGGCUCU-CG------------ACAUCUGGAGGg -5'
27438 5' -55.6 NC_005869.1 + 4929 1.13 0.000269
Target:  5'- uGCUUGCCCGAGAGCUGUAGACCUCCCc -3'
miRNA:   3'- -CGAACGGGCUCUCGACAUCUGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.