miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2744 3' -60.1 NC_001491.2 + 140257 0.66 0.723307
Target:  5'- cGGCgaggagUCCGAGCGGGgacgGGGacggGGGCGg -3'
miRNA:   3'- -UCGag----AGGUUCGCCCga--CUCa---CCCGC- -5'
2744 3' -60.1 NC_001491.2 + 142450 0.66 0.723307
Target:  5'- cGCUC-CCGAGaCGGGggGuGgGGGCGu -3'
miRNA:   3'- uCGAGaGGUUC-GCCCgaCuCaCCCGC- -5'
2744 3' -60.1 NC_001491.2 + 96730 0.67 0.673933
Target:  5'- uGCUCUCCuuuugauAGCGGGaccCUGcuuuugGGGCGa -3'
miRNA:   3'- uCGAGAGGu------UCGCCC---GACuca---CCCGC- -5'
2744 3' -60.1 NC_001491.2 + 110705 0.68 0.583624
Target:  5'- aAGCUCUgaggGAGCaGGGCUauuuGGUGGGCGu -3'
miRNA:   3'- -UCGAGAgg--UUCG-CCCGAc---UCACCCGC- -5'
2744 3' -60.1 NC_001491.2 + 117315 0.68 0.573666
Target:  5'- gGGgaCUCgCGGGaCGGGCU--GUGGGCGa -3'
miRNA:   3'- -UCgaGAG-GUUC-GCCCGAcuCACCCGC- -5'
2744 3' -60.1 NC_001491.2 + 140650 0.69 0.553876
Target:  5'- gGGUgCUCCGAGCcccGGCUGGG-GGaGCGg -3'
miRNA:   3'- -UCGaGAGGUUCGc--CCGACUCaCC-CGC- -5'
2744 3' -60.1 NC_001491.2 + 55892 0.69 0.544055
Target:  5'- cAGC-CUCgCAAGCGcGGgUGAGguuggGGGCa -3'
miRNA:   3'- -UCGaGAG-GUUCGC-CCgACUCa----CCCGc -5'
2744 3' -60.1 NC_001491.2 + 3644 0.69 0.528465
Target:  5'- cGgUCUCCucucggauagacuugAGGCGGGCUG-GaGGGCGu -3'
miRNA:   3'- uCgAGAGG---------------UUCGCCCGACuCaCCCGC- -5'
2744 3' -60.1 NC_001491.2 + 113840 0.7 0.477202
Target:  5'- uGUUUaCUggGCGGGUUGA-UGGGCGg -3'
miRNA:   3'- uCGAGaGGuuCGCCCGACUcACCCGC- -5'
2744 3' -60.1 NC_001491.2 + 311 0.71 0.405302
Target:  5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3'
miRNA:   3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5'
2744 3' -60.1 NC_001491.2 + 345 0.71 0.405302
Target:  5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3'
miRNA:   3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5'
2744 3' -60.1 NC_001491.2 + 379 0.71 0.405302
Target:  5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3'
miRNA:   3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5'
2744 3' -60.1 NC_001491.2 + 413 0.71 0.405302
Target:  5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3'
miRNA:   3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5'
2744 3' -60.1 NC_001491.2 + 447 0.71 0.405302
Target:  5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3'
miRNA:   3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5'
2744 3' -60.1 NC_001491.2 + 481 0.71 0.405302
Target:  5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3'
miRNA:   3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5'
2744 3' -60.1 NC_001491.2 + 61705 0.74 0.272794
Target:  5'- cGGCUUUCCcAGCGGGUgggGGGU-GGCGa -3'
miRNA:   3'- -UCGAGAGGuUCGCCCGa--CUCAcCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.