Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2744 | 3' | -60.1 | NC_001491.2 | + | 61705 | 0.74 | 0.272794 |
Target: 5'- cGGCUUUCCcAGCGGGUgggGGGU-GGCGa -3' miRNA: 3'- -UCGAGAGGuUCGCCCGa--CUCAcCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 481 | 0.71 | 0.405302 |
Target: 5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3' miRNA: 3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 447 | 0.71 | 0.405302 |
Target: 5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3' miRNA: 3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 413 | 0.71 | 0.405302 |
Target: 5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3' miRNA: 3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 379 | 0.71 | 0.405302 |
Target: 5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3' miRNA: 3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 345 | 0.71 | 0.405302 |
Target: 5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3' miRNA: 3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 311 | 0.71 | 0.405302 |
Target: 5'- uGGC-CUCCcAGUGGGCgUGgccucccAGUGGGCGu -3' miRNA: 3'- -UCGaGAGGuUCGCCCG-AC-------UCACCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 113840 | 0.7 | 0.477202 |
Target: 5'- uGUUUaCUggGCGGGUUGA-UGGGCGg -3' miRNA: 3'- uCGAGaGGuuCGCCCGACUcACCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 3644 | 0.69 | 0.528465 |
Target: 5'- cGgUCUCCucucggauagacuugAGGCGGGCUG-GaGGGCGu -3' miRNA: 3'- uCgAGAGG---------------UUCGCCCGACuCaCCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 55892 | 0.69 | 0.544055 |
Target: 5'- cAGC-CUCgCAAGCGcGGgUGAGguuggGGGCa -3' miRNA: 3'- -UCGaGAG-GUUCGC-CCgACUCa----CCCGc -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 140650 | 0.69 | 0.553876 |
Target: 5'- gGGUgCUCCGAGCcccGGCUGGG-GGaGCGg -3' miRNA: 3'- -UCGaGAGGUUCGc--CCGACUCaCC-CGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 117315 | 0.68 | 0.573666 |
Target: 5'- gGGgaCUCgCGGGaCGGGCU--GUGGGCGa -3' miRNA: 3'- -UCgaGAG-GUUC-GCCCGAcuCACCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 110705 | 0.68 | 0.583624 |
Target: 5'- aAGCUCUgaggGAGCaGGGCUauuuGGUGGGCGu -3' miRNA: 3'- -UCGAGAgg--UUCG-CCCGAc---UCACCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 96730 | 0.67 | 0.673933 |
Target: 5'- uGCUCUCCuuuugauAGCGGGaccCUGcuuuugGGGCGa -3' miRNA: 3'- uCGAGAGGu------UCGCCC---GACuca---CCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 142450 | 0.66 | 0.723307 |
Target: 5'- cGCUC-CCGAGaCGGGggGuGgGGGCGu -3' miRNA: 3'- uCGAGaGGUUC-GCCCgaCuCaCCCGC- -5' |
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2744 | 3' | -60.1 | NC_001491.2 | + | 140257 | 0.66 | 0.723307 |
Target: 5'- cGGCgaggagUCCGAGCGGGgacgGGGacggGGGCGg -3' miRNA: 3'- -UCGag----AGGUUCGCCCga--CUCa---CCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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