miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27441 3' -62.8 NC_005869.1 + 3880 1.07 0.000144
Target:  5'- cCACCACCCACCCCGGAGAGCGACCCUg -3'
miRNA:   3'- -GUGGUGGGUGGGGCCUCUCGCUGGGA- -5'
27441 3' -62.8 NC_005869.1 + 16793 0.79 0.02314
Target:  5'- uGCCGCCCACCgccaCGGAG-GUGGCCCUg -3'
miRNA:   3'- gUGGUGGGUGGg---GCCUCuCGCUGGGA- -5'
27441 3' -62.8 NC_005869.1 + 2069 0.74 0.067232
Target:  5'- uCGCCGCCgGCCCgGGGGAGCGGgUg- -3'
miRNA:   3'- -GUGGUGGgUGGGgCCUCUCGCUgGga -5'
27441 3' -62.8 NC_005869.1 + 18753 0.72 0.081974
Target:  5'- cCGCCGCCCccGCCCCGGcccccGCGGCuCCUg -3'
miRNA:   3'- -GUGGUGGG--UGGGGCCucu--CGCUG-GGA- -5'
27441 3' -62.8 NC_005869.1 + 22042 0.71 0.108469
Target:  5'- gGCCGCCCGCCacaCCGGAG-GCcGCCaCUg -3'
miRNA:   3'- gUGGUGGGUGG---GGCCUCuCGcUGG-GA- -5'
27441 3' -62.8 NC_005869.1 + 9526 0.7 0.117873
Target:  5'- gAgCugCgGCCCCgGGAGGGCGGCCg- -3'
miRNA:   3'- gUgGugGgUGGGG-CCUCUCGCUGGga -5'
27441 3' -62.8 NC_005869.1 + 17135 0.7 0.121173
Target:  5'- gGCUGCCCGCgCaCGGAG-GCGACCg- -3'
miRNA:   3'- gUGGUGGGUGgG-GCCUCuCGCUGGga -5'
27441 3' -62.8 NC_005869.1 + 17415 0.7 0.121173
Target:  5'- -cCCACCCcgcgcGCCCCGGuGguuccGGUGGCCCg -3'
miRNA:   3'- guGGUGGG-----UGGGGCCuC-----UCGCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 26142 0.7 0.121173
Target:  5'- cCACCGCCCACCaugccgccccuCCGGAG-GaaGCCCa -3'
miRNA:   3'- -GUGGUGGGUGG-----------GGCCUCuCgcUGGGa -5'
27441 3' -62.8 NC_005869.1 + 23127 0.7 0.131594
Target:  5'- gGCCugCUACCCCGGAuGGGCaACgCg -3'
miRNA:   3'- gUGGugGGUGGGGCCU-CUCGcUGgGa -5'
27441 3' -62.8 NC_005869.1 + 17536 0.69 0.142449
Target:  5'- uCGCCGCCgUACCCCGGuggcgguGGcAGCGccGCCCg -3'
miRNA:   3'- -GUGGUGG-GUGGGGCC-------UC-UCGC--UGGGa -5'
27441 3' -62.8 NC_005869.1 + 10498 0.69 0.146776
Target:  5'- aCACCAaccaaCCACaCCCGGuucuuuuugacAGAGCG-CCCUc -3'
miRNA:   3'- -GUGGUg----GGUG-GGGCC-----------UCUCGCuGGGA- -5'
27441 3' -62.8 NC_005869.1 + 23784 0.69 0.149592
Target:  5'- cCGCCcCCCGCgCCCGGuGAccccgagcccggcgGUGGCCCg -3'
miRNA:   3'- -GUGGuGGGUG-GGGCCuCU--------------CGCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 32589 0.69 0.150814
Target:  5'- gCACUcCCCGCCCCcuuGGAacaGGGCGGCCg- -3'
miRNA:   3'- -GUGGuGGGUGGGG---CCU---CUCGCUGGga -5'
27441 3' -62.8 NC_005869.1 + 17202 0.69 0.150814
Target:  5'- cCACCggcucgguGCCCACCCCcacGGAGAcgGUGGCCg- -3'
miRNA:   3'- -GUGG--------UGGGUGGGG---CCUCU--CGCUGGga -5'
27441 3' -62.8 NC_005869.1 + 20738 0.69 0.154952
Target:  5'- aGCCugCUGCUCCugccGGGGGCGACCUa -3'
miRNA:   3'- gUGGugGGUGGGGc---CUCUCGCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 9469 0.69 0.154952
Target:  5'- gGCCGCCC-UCCCGGGGccgcagcucgaaGGCGcCCCc -3'
miRNA:   3'- gUGGUGGGuGGGGCCUC------------UCGCuGGGa -5'
27441 3' -62.8 NC_005869.1 + 17385 0.69 0.159193
Target:  5'- aGCCACCugCACCCCcuGGGAGCGGgUCUc -3'
miRNA:   3'- gUGGUGG--GUGGGGc-CUCUCGCUgGGA- -5'
27441 3' -62.8 NC_005869.1 + 9257 0.68 0.17209
Target:  5'- gGCCAUcgCCGCCCUGGAaGAGgagcucacggucuCGGCCCg -3'
miRNA:   3'- gUGGUG--GGUGGGGCCU-CUC-------------GCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 17270 0.68 0.172551
Target:  5'- gCACCAacaCGCCCCGGcugaGGAGCGcCUCg -3'
miRNA:   3'- -GUGGUgg-GUGGGGCC----UCUCGCuGGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.