miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27441 3' -62.8 NC_005869.1 + 13225 0.67 0.213151
Target:  5'- gCGCCGCuCCAgCCUGGccAGCGGCgCCg -3'
miRNA:   3'- -GUGGUG-GGUgGGGCCucUCGCUG-GGa -5'
27441 3' -62.8 NC_005869.1 + 11565 0.67 0.213151
Target:  5'- -cUCGCCCuCCCCGGccAGCG-CCCg -3'
miRNA:   3'- guGGUGGGuGGGGCCucUCGCuGGGa -5'
27441 3' -62.8 NC_005869.1 + 3708 0.67 0.213151
Target:  5'- gGCCA-CgGCCUCGGAG-GCGGCCg- -3'
miRNA:   3'- gUGGUgGgUGGGGCCUCuCGCUGGga -5'
27441 3' -62.8 NC_005869.1 + 11791 0.67 0.207659
Target:  5'- gCGCUGCCCuCCCUGGAcgagccuuggGAGCaGGCUCUg -3'
miRNA:   3'- -GUGGUGGGuGGGGCCU----------CUCG-CUGGGA- -5'
27441 3' -62.8 NC_005869.1 + 25102 0.67 0.200702
Target:  5'- uCACCucccgcgagaugguGCgCCGCCUCGGAGAGUG-CCUc -3'
miRNA:   3'- -GUGG--------------UG-GGUGGGGCCUCUCGCuGGGa -5'
27441 3' -62.8 NC_005869.1 + 17596 0.67 0.19704
Target:  5'- uGCCA-CCGCCaCCGGGGuacggcGGCGACgCCg -3'
miRNA:   3'- gUGGUgGGUGG-GGCCUC------UCGCUG-GGa -5'
27441 3' -62.8 NC_005869.1 + 3561 0.67 0.191911
Target:  5'- gGCCAgcacCCCGCUCUGGgcaGGGGCG-CCCa -3'
miRNA:   3'- gUGGU----GGGUGGGGCC---UCUCGCuGGGa -5'
27441 3' -62.8 NC_005869.1 + 6446 0.67 0.191405
Target:  5'- gCACgGCCCAgCCacgguugUGGAGGGUGACCa- -3'
miRNA:   3'- -GUGgUGGGUgGG-------GCCUCUCGCUGGga -5'
27441 3' -62.8 NC_005869.1 + 8386 0.68 0.182003
Target:  5'- gGCUACCCcccagACCgCGGuGGAGCuGGCCCg -3'
miRNA:   3'- gUGGUGGG-----UGGgGCC-UCUCG-CUGGGa -5'
27441 3' -62.8 NC_005869.1 + 16051 0.68 0.182003
Target:  5'- gCGCCGCCCcguccagcgGCgCCUGGGGcGCGugCCc -3'
miRNA:   3'- -GUGGUGGG---------UG-GGGCCUCuCGCugGGa -5'
27441 3' -62.8 NC_005869.1 + 17270 0.68 0.172551
Target:  5'- gCACCAacaCGCCCCGGcugaGGAGCGcCUCg -3'
miRNA:   3'- -GUGGUgg-GUGGGGCC----UCUCGCuGGGa -5'
27441 3' -62.8 NC_005869.1 + 9257 0.68 0.17209
Target:  5'- gGCCAUcgCCGCCCUGGAaGAGgagcucacggucuCGGCCCg -3'
miRNA:   3'- gUGGUG--GGUGGGGCCU-CUC-------------GCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 17385 0.69 0.159193
Target:  5'- aGCCACCugCACCCCcuGGGAGCGGgUCUc -3'
miRNA:   3'- gUGGUGG--GUGGGGc-CUCUCGCUgGGA- -5'
27441 3' -62.8 NC_005869.1 + 9469 0.69 0.154952
Target:  5'- gGCCGCCC-UCCCGGGGccgcagcucgaaGGCGcCCCc -3'
miRNA:   3'- gUGGUGGGuGGGGCCUC------------UCGCuGGGa -5'
27441 3' -62.8 NC_005869.1 + 20738 0.69 0.154952
Target:  5'- aGCCugCUGCUCCugccGGGGGCGACCUa -3'
miRNA:   3'- gUGGugGGUGGGGc---CUCUCGCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 17202 0.69 0.150814
Target:  5'- cCACCggcucgguGCCCACCCCcacGGAGAcgGUGGCCg- -3'
miRNA:   3'- -GUGG--------UGGGUGGGG---CCUCU--CGCUGGga -5'
27441 3' -62.8 NC_005869.1 + 32589 0.69 0.150814
Target:  5'- gCACUcCCCGCCCCcuuGGAacaGGGCGGCCg- -3'
miRNA:   3'- -GUGGuGGGUGGGG---CCU---CUCGCUGGga -5'
27441 3' -62.8 NC_005869.1 + 23784 0.69 0.149592
Target:  5'- cCGCCcCCCGCgCCCGGuGAccccgagcccggcgGUGGCCCg -3'
miRNA:   3'- -GUGGuGGGUG-GGGCCuCU--------------CGCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 10498 0.69 0.146776
Target:  5'- aCACCAaccaaCCACaCCCGGuucuuuuugacAGAGCG-CCCUc -3'
miRNA:   3'- -GUGGUg----GGUG-GGGCC-----------UCUCGCuGGGA- -5'
27441 3' -62.8 NC_005869.1 + 17536 0.69 0.142449
Target:  5'- uCGCCGCCgUACCCCGGuggcgguGGcAGCGccGCCCg -3'
miRNA:   3'- -GUGGUGG-GUGGGGCC-------UC-UCGC--UGGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.