Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
27444 | 3' | -58.6 | NC_005869.1 | + | 17153 | 0.67 | 0.328472 |
Target: 5'- -gGGCACCgaGCcgguGGUGCAGUccaucacggUCAAGCg -3' miRNA: 3'- cgCCGUGGg-UGc---CCACGUCG---------AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17039 | 0.68 | 0.312515 |
Target: 5'- aCGGC-CCUGCGGGgcacGCGGCgCGGGg -3' miRNA: 3'- cGCCGuGGGUGCCCa---CGUCGaGUUCg -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16945 | 0.68 | 0.282386 |
Target: 5'- cCGGCACCCGCucGGUGCccaUCAGcGCg -3' miRNA: 3'- cGCCGUGGGUGc-CCACGucgAGUU-CG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 20723 | 0.68 | 0.282386 |
Target: 5'- aGCGGCcguuGCCCAggagcUGGGagcgGUAGCgCAGGCc -3' miRNA: 3'- -CGCCG----UGGGU-----GCCCa---CGUCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 14678 | 0.68 | 0.312515 |
Target: 5'- gGCGGUGCCCGuggcCGGGUccccGUAGUUgUAGGCc -3' miRNA: 3'- -CGCCGUGGGU----GCCCA----CGUCGA-GUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 10854 | 0.68 | 0.312515 |
Target: 5'- uGCGGUuCCgCGCGGGgcgggagaUGCAGCUgGaccgggAGCg -3' miRNA: 3'- -CGCCGuGG-GUGCCC--------ACGUCGAgU------UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 8521 | 0.68 | 0.304761 |
Target: 5'- cGCGGCcUCgGCGGcG-GCGGCcggucUCAGGCg -3' miRNA: 3'- -CGCCGuGGgUGCC-CaCGUCG-----AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17447 | 0.68 | 0.304761 |
Target: 5'- cCGGCGCCCGCG---GCGGUUCcGGUg -3' miRNA: 3'- cGCCGUGGGUGCccaCGUCGAGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 8842 | 0.68 | 0.304761 |
Target: 5'- cCGGCGCgcuCCACGGuG-GCGGC-CAGGUc -3' miRNA: 3'- cGCCGUG---GGUGCC-CaCGUCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 9914 | 0.69 | 0.268205 |
Target: 5'- cGUGGCACaucugCUGCaGGaGCAGCUCAAGg -3' miRNA: 3'- -CGCCGUG-----GGUGcCCaCGUCGAGUUCg -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 2985 | 0.69 | 0.248019 |
Target: 5'- gGCGGcCGCCCACaaacauGGUGCuGCggagGAGCa -3' miRNA: 3'- -CGCC-GUGGGUGc-----CCACGuCGag--UUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 13351 | 0.69 | 0.267511 |
Target: 5'- gGCGGCGCCU--GGGUGCucGUUCAcauccuugggaggGGCc -3' miRNA: 3'- -CGCCGUGGGugCCCACGu-CGAGU-------------UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 24459 | 0.69 | 0.268205 |
Target: 5'- cGCGGCugCgC-CGGGgGCGGcCUCcuGCa -3' miRNA: 3'- -CGCCGugG-GuGCCCaCGUC-GAGuuCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 2611 | 0.69 | 0.261332 |
Target: 5'- -aGGCGCuggaCCAcCGGGgGCGGCUguGGCu -3' miRNA: 3'- cgCCGUG----GGU-GCCCaCGUCGAguUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 15421 | 0.7 | 0.211426 |
Target: 5'- gGCGGCGCCgGCGGcGgGUGGCgCcGGCg -3' miRNA: 3'- -CGCCGUGGgUGCC-CaCGUCGaGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 200 | 0.7 | 0.223078 |
Target: 5'- gGCGGUcCuCCGCGGG-GCggGGC-CGAGCg -3' miRNA: 3'- -CGCCGuG-GGUGCCCaCG--UCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 28650 | 0.7 | 0.211426 |
Target: 5'- gGUGGCAgCgGCGGGgcGCGGUUCcuGCu -3' miRNA: 3'- -CGCCGUgGgUGCCCa-CGUCGAGuuCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 6530 | 0.7 | 0.229106 |
Target: 5'- gGCGGcCGCCCuuGCGGGaGCAGUagGggGGCa -3' miRNA: 3'- -CGCC-GUGGG--UGCCCaCGUCGagU--UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 8458 | 0.7 | 0.217185 |
Target: 5'- gGUGGUGCCCuggaggcggaGGGUgGCGcggcGCUCGAGCa -3' miRNA: 3'- -CGCCGUGGGug--------CCCA-CGU----CGAGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17830 | 0.7 | 0.217185 |
Target: 5'- cGUGGCGCCU-CGGc-GCAGCggcggCAGGCg -3' miRNA: 3'- -CGCCGUGGGuGCCcaCGUCGa----GUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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