Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27444 | 3' | -58.6 | NC_005869.1 | + | 12343 | 0.66 | 0.417032 |
Target: 5'- cGCGcCGCCUGCaggaaGGuGUGCGGCccCGAGCg -3' miRNA: 3'- -CGCcGUGGGUG-----CC-CACGUCGa-GUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 13351 | 0.69 | 0.267511 |
Target: 5'- gGCGGCGCCU--GGGUGCucGUUCAcauccuugggaggGGCc -3' miRNA: 3'- -CGCCGUGGGugCCCACGu-CGAGU-------------UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 14678 | 0.68 | 0.312515 |
Target: 5'- gGCGGUGCCCGuggcCGGGUccccGUAGUUgUAGGCc -3' miRNA: 3'- -CGCCGUGGGU----GCCCA----CGUCGA-GUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 15066 | 0.67 | 0.362163 |
Target: 5'- cGCGGCGCCgCGCGucGGUGaCGGUUacccGCu -3' miRNA: 3'- -CGCCGUGG-GUGC--CCAC-GUCGAguu-CG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 15421 | 0.7 | 0.211426 |
Target: 5'- gGCGGCGCCgGCGGcGgGUGGCgCcGGCg -3' miRNA: 3'- -CGCCGUGGgUGCC-CaCGUCGaGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 15537 | 0.67 | 0.353519 |
Target: 5'- aCGGCGCCgCGCGcG-GCGGCgcCGGGCu -3' miRNA: 3'- cGCCGUGG-GUGCcCaCGUCGa-GUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 15854 | 0.66 | 0.378987 |
Target: 5'- cGCGGCGCgagauggCCAUGgccgagcgcgucGGUGcCGGCUCAacuggGGCg -3' miRNA: 3'- -CGCCGUG-------GGUGC------------CCAC-GUCGAGU-----UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16037 | 0.66 | 0.407538 |
Target: 5'- aGCGGCG-CCugGGGcGCGuGC-CcAGCa -3' miRNA: 3'- -CGCCGUgGGugCCCaCGU-CGaGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16448 | 0.66 | 0.388964 |
Target: 5'- aGCGGCugCaggCugGGuGUGUGGUUCcuGCc -3' miRNA: 3'- -CGCCGugG---GugCC-CACGUCGAGuuCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16622 | 0.66 | 0.417032 |
Target: 5'- cGCGGgGCUagggGCGGcGUgGguGCUgGAGCg -3' miRNA: 3'- -CGCCgUGGg---UGCC-CA-CguCGAgUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16671 | 0.67 | 0.320419 |
Target: 5'- cGCGGCGCUggaGCGGGcgGCGGC-CGccguGCc -3' miRNA: 3'- -CGCCGUGGg--UGCCCa-CGUCGaGUu---CG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16832 | 0.66 | 0.398181 |
Target: 5'- gGCGGCAUgauggagACGGGgaggcuggGCAGCaccUCGGGCg -3' miRNA: 3'- -CGCCGUGgg-----UGCCCa-------CGUCG---AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16893 | 0.72 | 0.160777 |
Target: 5'- -gGGCACCgaGCGGGUGCcGGUUCcAGUc -3' miRNA: 3'- cgCCGUGGg-UGCCCACG-UCGAGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16945 | 0.68 | 0.282386 |
Target: 5'- cCGGCACCCGCucGGUGCccaUCAGcGCg -3' miRNA: 3'- cGCCGUGGGUGc-CCACGucgAGUU-CG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17039 | 0.68 | 0.312515 |
Target: 5'- aCGGC-CCUGCGGGgcacGCGGCgCGGGg -3' miRNA: 3'- cGCCGuGGGUGCCCa---CGUCGaGUUCg -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17153 | 0.67 | 0.328472 |
Target: 5'- -gGGCACCgaGCcgguGGUGCAGUccaucacggUCAAGCg -3' miRNA: 3'- cgCCGUGGg-UGc---CCACGUCG---------AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17447 | 0.68 | 0.304761 |
Target: 5'- cCGGCGCCCGCG---GCGGUUCcGGUg -3' miRNA: 3'- cGCCGUGGGUGCccaCGUCGAGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17538 | 0.7 | 0.200302 |
Target: 5'- cGCGGCGCgCGCGGG-GCuggaggGGCUgGGGg -3' miRNA: 3'- -CGCCGUGgGUGCCCaCG------UCGAgUUCg -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17608 | 0.66 | 0.379887 |
Target: 5'- gGCGGCccaucgugcuGCCCG-GGGUGC-GCuaucaucccagUCAGGCc -3' miRNA: 3'- -CGCCG----------UGGGUgCCCACGuCG-----------AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17830 | 0.7 | 0.217185 |
Target: 5'- cGUGGCGCCU-CGGc-GCAGCggcggCAGGCg -3' miRNA: 3'- -CGCCGUGGGuGCCcaCGUCGa----GUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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