miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27444 3' -58.6 NC_005869.1 + 10746 1.14 0.000102
Target:  5'- aGCGGCACCCACGGGUGCAGCUCAAGCg -3'
miRNA:   3'- -CGCCGUGGGUGCCCACGUCGAGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 9466 0.8 0.042384
Target:  5'- cGCGGcCGCCCuccCGGGgccGCAGCUCGaaGGCg -3'
miRNA:   3'- -CGCC-GUGGGu--GCCCa--CGUCGAGU--UCG- -5'
27444 3' -58.6 NC_005869.1 + 10800 0.79 0.04773
Target:  5'- aGCuGCACCCGUGGGUGCcGCUCGGGg -3'
miRNA:   3'- -CGcCGUGGGUGCCCACGuCGAGUUCg -5'
27444 3' -58.6 NC_005869.1 + 9556 0.73 0.143768
Target:  5'- aGCGGCACCgcgcugCGCGGGgGC-GCcuUCGAGCu -3'
miRNA:   3'- -CGCCGUGG------GUGCCCaCGuCG--AGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 8557 0.72 0.160777
Target:  5'- cGCGGagGCCggcaCGCGGGgGCuccuGCUCGAGCg -3'
miRNA:   3'- -CGCCg-UGG----GUGCCCaCGu---CGAGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 4603 0.72 0.160777
Target:  5'- aUGGCGaugggUCCGCGGGcgGCGGCgCGGGCg -3'
miRNA:   3'- cGCCGU-----GGGUGCCCa-CGUCGaGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 16893 0.72 0.160777
Target:  5'- -gGGCACCgaGCGGGUGCcGGUUCcAGUc -3'
miRNA:   3'- cgCCGUGGg-UGCCCACG-UCGAGuUCG- -5'
27444 3' -58.6 NC_005869.1 + 11761 0.71 0.174702
Target:  5'- cUGGCGCCCgaGCGGGcgacGCGGaugCAGGCg -3'
miRNA:   3'- cGCCGUGGG--UGCCCa---CGUCga-GUUCG- -5'
27444 3' -58.6 NC_005869.1 + 22014 0.71 0.184573
Target:  5'- -aGGUGCCCaggaaGCGGG-GCAGCUgGAGg -3'
miRNA:   3'- cgCCGUGGG-----UGCCCaCGUCGAgUUCg -5'
27444 3' -58.6 NC_005869.1 + 22784 0.71 0.189691
Target:  5'- cGCGGCcUCCACugacGGUGCccgAGUUCAAGUg -3'
miRNA:   3'- -CGCCGuGGGUGc---CCACG---UCGAGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 17538 0.7 0.200302
Target:  5'- cGCGGCGCgCGCGGG-GCuggaggGGCUgGGGg -3'
miRNA:   3'- -CGCCGUGgGUGCCCaCG------UCGAgUUCg -5'
27444 3' -58.6 NC_005869.1 + 28650 0.7 0.211426
Target:  5'- gGUGGCAgCgGCGGGgcGCGGUUCcuGCu -3'
miRNA:   3'- -CGCCGUgGgUGCCCa-CGUCGAGuuCG- -5'
27444 3' -58.6 NC_005869.1 + 15421 0.7 0.211426
Target:  5'- gGCGGCGCCgGCGGcGgGUGGCgCcGGCg -3'
miRNA:   3'- -CGCCGUGGgUGCC-CaCGUCGaGuUCG- -5'
27444 3' -58.6 NC_005869.1 + 17830 0.7 0.217185
Target:  5'- cGUGGCGCCU-CGGc-GCAGCggcggCAGGCg -3'
miRNA:   3'- -CGCCGUGGGuGCCcaCGUCGa----GUUCG- -5'
27444 3' -58.6 NC_005869.1 + 8458 0.7 0.217185
Target:  5'- gGUGGUGCCCuggaggcggaGGGUgGCGcggcGCUCGAGCa -3'
miRNA:   3'- -CGCCGUGGGug--------CCCA-CGU----CGAGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 200 0.7 0.223078
Target:  5'- gGCGGUcCuCCGCGGG-GCggGGC-CGAGCg -3'
miRNA:   3'- -CGCCGuG-GGUGCCCaCG--UCGaGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 6530 0.7 0.229106
Target:  5'- gGCGGcCGCCCuuGCGGGaGCAGUagGggGGCa -3'
miRNA:   3'- -CGCC-GUGGG--UGCCCaCGUCGagU--UCG- -5'
27444 3' -58.6 NC_005869.1 + 2985 0.69 0.248019
Target:  5'- gGCGGcCGCCCACaaacauGGUGCuGCggagGAGCa -3'
miRNA:   3'- -CGCC-GUGGGUGc-----CCACGuCGag--UUCG- -5'
27444 3' -58.6 NC_005869.1 + 2611 0.69 0.261332
Target:  5'- -aGGCGCuggaCCAcCGGGgGCGGCUguGGCu -3'
miRNA:   3'- cgCCGUG----GGU-GCCCaCGUCGAguUCG- -5'
27444 3' -58.6 NC_005869.1 + 13351 0.69 0.267511
Target:  5'- gGCGGCGCCU--GGGUGCucGUUCAcauccuugggaggGGCc -3'
miRNA:   3'- -CGCCGUGGGugCCCACGu-CGAGU-------------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.