miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27444 5' -55.8 NC_005869.1 + 9773 0.66 0.508989
Target:  5'- gAGGUCUuUGcgGCCGgcgcgcugcAGGCGG-AUGCGg -3'
miRNA:   3'- -UCCGGAuACa-CGGC---------UCCGUCuUACGC- -5'
27444 5' -55.8 NC_005869.1 + 4237 0.66 0.487372
Target:  5'- aGGGCUgg-GUGCgGGGGgCAG-GUGCa -3'
miRNA:   3'- -UCCGGauaCACGgCUCC-GUCuUACGc -5'
27444 5' -55.8 NC_005869.1 + 7291 0.66 0.487372
Target:  5'- cGGCCU---UGCgGAGGCuGGuGUGCGu -3'
miRNA:   3'- uCCGGAuacACGgCUCCG-UCuUACGC- -5'
27444 5' -55.8 NC_005869.1 + 7752 0.67 0.466198
Target:  5'- cGGGCCUGcagggcGUGCCGcaGGGCcuuGAagGCGc -3'
miRNA:   3'- -UCCGGAUa-----CACGGC--UCCGu--CUuaCGC- -5'
27444 5' -55.8 NC_005869.1 + 1872 0.67 0.43536
Target:  5'- aGGGgCUGUGcaucaucaggaUGCCGAGcGCGGA--GCGg -3'
miRNA:   3'- -UCCgGAUAC-----------ACGGCUC-CGUCUuaCGC- -5'
27444 5' -55.8 NC_005869.1 + 23650 0.67 0.43536
Target:  5'- aGGGCCUGacgcUGcUGCCGGacGGCagcacccuGGAGUGCu -3'
miRNA:   3'- -UCCGGAU----AC-ACGGCU--CCG--------UCUUACGc -5'
27444 5' -55.8 NC_005869.1 + 12753 0.68 0.386702
Target:  5'- cGGCCUGc-UGCaCGuAGcGCAGGAUGCGc -3'
miRNA:   3'- uCCGGAUacACG-GC-UC-CGUCUUACGC- -5'
27444 5' -55.8 NC_005869.1 + 25837 0.7 0.300729
Target:  5'- aGGGCgguguugGUGgCGAGGCAGcGGUGCGg -3'
miRNA:   3'- -UCCGgaua---CACgGCUCCGUC-UUACGC- -5'
27444 5' -55.8 NC_005869.1 + 18817 0.7 0.277987
Target:  5'- aGGaGCCgcgGggGCCGGGGCGGGGgcgGCGg -3'
miRNA:   3'- -UC-CGGauaCa-CGGCUCCGUCUUa--CGC- -5'
27444 5' -55.8 NC_005869.1 + 18576 0.74 0.164646
Target:  5'- uGGCgCgcgggaGUG-GCCGAGGCAGGcgGCGg -3'
miRNA:   3'- uCCG-Ga-----UACaCGGCUCCGUCUuaCGC- -5'
27444 5' -55.8 NC_005869.1 + 10784 1.08 0.000433
Target:  5'- gAGGCCUAUGUGCCGAGGCAGAAUGCGu -3'
miRNA:   3'- -UCCGGAUACACGGCUCCGUCUUACGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.