Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27445 | 5' | -66.5 | NC_005869.1 | + | 3186 | 0.72 | 0.046834 |
Target: 5'- -cGCUGCGGGCCCCCcggucccuggugaGCUgcaacuggGGGGAGUu -3' miRNA: 3'- ccCGACGUCCGGGGG-------------CGA--------CCCCUCGc -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 5735 | 0.66 | 0.153637 |
Target: 5'- aGGCUGuCGGuGUCCCCGUagacGGAGCGc -3' miRNA: 3'- cCCGAC-GUC-CGGGGGCGacc-CCUCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 7997 | 0.7 | 0.075635 |
Target: 5'- aGGCgGCGGGUgCCCuCgGGGGAGCc -3' miRNA: 3'- cCCGaCGUCCGgGGGcGaCCCCUCGc -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 8226 | 0.76 | 0.025141 |
Target: 5'- gGGGCgGCGGGCCCUCGggcGGGGGGUc -3' miRNA: 3'- -CCCGaCGUCCGGGGGCga-CCCCUCGc -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 8313 | 0.69 | 0.086875 |
Target: 5'- cGGCggcGCGGGCCagcuccaCCGCggucUGGGGGGUa -3' miRNA: 3'- cCCGa--CGUCCGGg------GGCG----ACCCCUCGc -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 9347 | 0.7 | 0.077765 |
Target: 5'- -uGCUGCu-GCCUCCGCggggacGGGGGGCGc -3' miRNA: 3'- ccCGACGucCGGGGGCGa-----CCCCUCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 12368 | 1.08 | 0.000048 |
Target: 5'- gGGGCUGCAGGCCCCCGCUGGGGAGCGc -3' miRNA: 3'- -CCCGACGUCCGGGGGCGACCCCUCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 13293 | 0.67 | 0.130495 |
Target: 5'- aGGCUGUcGGCg-CCGCUGGccaggcuGGAGCGg -3' miRNA: 3'- cCCGACGuCCGggGGCGACC-------CCUCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 15266 | 0.66 | 0.149603 |
Target: 5'- aGGCgGCGGgcGCCCCCGUacauGGAGCGc -3' miRNA: 3'- cCCGaCGUC--CGGGGGCGacc-CCUCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 15592 | 0.69 | 0.08592 |
Target: 5'- cGGCggcGCAGGCgCUCCGCgccggccauccugGGGGuGCGc -3' miRNA: 3'- cCCGa--CGUCCG-GGGGCGa------------CCCCuCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 16239 | 0.67 | 0.114283 |
Target: 5'- cGGCgagggGCGGGCCCgCCGCUGccgccGGGCu -3' miRNA: 3'- cCCGa----CGUCCGGG-GGCGACcc---CUCGc -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 16358 | 0.7 | 0.069574 |
Target: 5'- cGGCUGU-GGCCguCCCGCUGGaGGAagGCa -3' miRNA: 3'- cCCGACGuCCGG--GGGCGACC-CCU--CGc -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 17267 | 0.66 | 0.153637 |
Target: 5'- uGGGCaccaaCAcGCCCCgGCUGaGGAGCGc -3' miRNA: 3'- -CCCGac---GUcCGGGGgCGACcCCUCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 17630 | 0.68 | 0.111214 |
Target: 5'- aGGGC-GgGGGaCCgCCGCUGcGGGcgGGCGg -3' miRNA: 3'- -CCCGaCgUCC-GGgGGCGAC-CCC--UCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 22376 | 0.66 | 0.162001 |
Target: 5'- cGGGaUUGUAGGCCauggggCUGUcGGGGuAGCGg -3' miRNA: 3'- -CCC-GACGUCCGGg-----GGCGaCCCC-UCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 23060 | 0.75 | 0.026618 |
Target: 5'- gGGGCUGCcgccaGGuGCCCCUGCUGGGccGGCa -3' miRNA: 3'- -CCCGACG-----UC-CGGGGGCGACCCc-UCGc -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 23721 | 0.66 | 0.141824 |
Target: 5'- cGGGCUcgGGGUCaCCgggCGC-GGGGGGCGg -3' miRNA: 3'- -CCCGAcgUCCGG-GG---GCGaCCCCUCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 24478 | 0.7 | 0.067659 |
Target: 5'- aGGGCgccucgGC-GGCCUCCGCggcugcgccGGGGGCGg -3' miRNA: 3'- -CCCGa-----CGuCCGGGGGCGac-------CCCUCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 24994 | 0.68 | 0.102464 |
Target: 5'- gGGGCgucucGCCCUCGUcGGGGAGUGg -3' miRNA: 3'- -CCCGacgucCGGGGGCGaCCCCUCGC- -5' |
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27445 | 5' | -66.5 | NC_005869.1 | + | 25914 | 0.69 | 0.079953 |
Target: 5'- aGGGCggugGCAGGgUgCCGUcgggcuUGGGGGGCc -3' miRNA: 3'- -CCCGa---CGUCCgGgGGCG------ACCCCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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