miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27446 5' -63.8 NC_005869.1 + 9371 0.66 0.201013
Target:  5'- gGGCGCaggCCggGGACGGcGCCGG-CGCAAg -3'
miRNA:   3'- -CCGCG---GGa-CCUGCUcCGGUCgGCGUU- -5'
27446 5' -63.8 NC_005869.1 + 23005 0.66 0.201013
Target:  5'- aGGgGCaCCUGG-CGGcagccCCAGCCGCAGu -3'
miRNA:   3'- -CCgCG-GGACCuGCUcc---GGUCGGCGUU- -5'
27446 5' -63.8 NC_005869.1 + 11201 0.66 0.200482
Target:  5'- aGGCGCugcugagCCUGGGCGc-GCCcgagAGCCGCu- -3'
miRNA:   3'- -CCGCG-------GGACCUGCucCGG----UCGGCGuu -5'
27446 5' -63.8 NC_005869.1 + 23128 0.66 0.196275
Target:  5'- uGCGCCUUGGAgcccuccgaguagaaGAGGCCgcaGGaCCGCGc -3'
miRNA:   3'- cCGCGGGACCUg--------------CUCCGG---UC-GGCGUu -5'
27446 5' -63.8 NC_005869.1 + 13286 0.66 0.195755
Target:  5'- cGGCGCCgCUGG-CcAGGCUggAGCgGCGc -3'
miRNA:   3'- -CCGCGG-GACCuGcUCCGG--UCGgCGUu -5'
27446 5' -63.8 NC_005869.1 + 8569 0.66 0.190617
Target:  5'- cGcCGCCgaGGccGCgGAGGCCGGCaCGCGGg -3'
miRNA:   3'- cC-GCGGgaCC--UG-CUCCGGUCG-GCGUU- -5'
27446 5' -63.8 NC_005869.1 + 9536 0.66 0.180696
Target:  5'- gGGCGCCuucgagCUGcGGCcccggGAGGgCGGCCGCGc -3'
miRNA:   3'- -CCGCGG------GAC-CUG-----CUCCgGUCGGCGUu -5'
27446 5' -63.8 NC_005869.1 + 16463 0.67 0.175909
Target:  5'- gGGCGCCCgccGACGAGcCCA-CCGCc- -3'
miRNA:   3'- -CCGCGGGac-CUGCUCcGGUcGGCGuu -5'
27446 5' -63.8 NC_005869.1 + 28410 0.67 0.171235
Target:  5'- uGGCGCUgcaCgaugaGGGCGGuGGCCAGCaCGUAGc -3'
miRNA:   3'- -CCGCGG---Ga----CCUGCU-CCGGUCG-GCGUU- -5'
27446 5' -63.8 NC_005869.1 + 33941 0.67 0.171235
Target:  5'- cGGUcaaaGUCCgagGGGCGGGGUCaaAGUCGCAGg -3'
miRNA:   3'- -CCG----CGGGa--CCUGCUCCGG--UCGGCGUU- -5'
27446 5' -63.8 NC_005869.1 + 8871 0.67 0.16222
Target:  5'- cGGgGaCCUGGACGAGGaCgAGCUcgaGCAGu -3'
miRNA:   3'- -CCgCgGGACCUGCUCC-GgUCGG---CGUU- -5'
27446 5' -63.8 NC_005869.1 + 9969 0.67 0.16222
Target:  5'- uGCGCCCccuGCGGGGCUacGGUCGCAc -3'
miRNA:   3'- cCGCGGGaccUGCUCCGG--UCGGCGUu -5'
27446 5' -63.8 NC_005869.1 + 8286 0.67 0.157874
Target:  5'- gGGUGaccaCCUGGACGaAGGUgGGCCcgGCGg -3'
miRNA:   3'- -CCGCg---GGACCUGC-UCCGgUCGG--CGUu -5'
27446 5' -63.8 NC_005869.1 + 16689 0.67 0.157874
Target:  5'- cGGCGCCac-GACGgccugGGGCCGGcCCGCc- -3'
miRNA:   3'- -CCGCGGgacCUGC-----UCCGGUC-GGCGuu -5'
27446 5' -63.8 NC_005869.1 + 8230 0.67 0.153633
Target:  5'- cGGCggGCCCUcGGGCGGGGggucCCAG-CGCAc -3'
miRNA:   3'- -CCG--CGGGA-CCUGCUCC----GGUCgGCGUu -5'
27446 5' -63.8 NC_005869.1 + 16619 0.67 0.153633
Target:  5'- cGCGCC--GGGCG-GGCCGGCCcCAGg -3'
miRNA:   3'- cCGCGGgaCCUGCuCCGGUCGGcGUU- -5'
27446 5' -63.8 NC_005869.1 + 17639 0.68 0.149497
Target:  5'- cGGCaGCCgaGGGCGGGGgaCC-GCCGCu- -3'
miRNA:   3'- -CCG-CGGgaCCUGCUCC--GGuCGGCGuu -5'
27446 5' -63.8 NC_005869.1 + 18791 0.68 0.141526
Target:  5'- cGGCGUCC-GGcCGcGGCUccGGCCGCGg -3'
miRNA:   3'- -CCGCGGGaCCuGCuCCGG--UCGGCGUu -5'
27446 5' -63.8 NC_005869.1 + 12587 0.68 0.130298
Target:  5'- gGGCGaCgaGGACGAcgcGGCgCGGCUGCAGg -3'
miRNA:   3'- -CCGCgGgaCCUGCU---CCG-GUCGGCGUU- -5'
27446 5' -63.8 NC_005869.1 + 18808 0.68 0.126741
Target:  5'- gGGgGCCg-GGGCGGGGgCGGCgGCGg -3'
miRNA:   3'- -CCgCGGgaCCUGCUCCgGUCGgCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.