miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27447 3' -55.8 NC_005869.1 + 5306 0.66 0.587285
Target:  5'- gCCCgcgugaGGGugGUCUcggUGACGGUGAaGGg -3'
miRNA:   3'- -GGGa-----CCCugCGGAa--ACUGUCGCUgCU- -5'
27447 3' -55.8 NC_005869.1 + 26272 0.66 0.576128
Target:  5'- -gCUGGaGCGgUggUGGCGGCGGCGGu -3'
miRNA:   3'- ggGACCcUGCgGaaACUGUCGCUGCU- -5'
27447 3' -55.8 NC_005869.1 + 17813 0.66 0.553966
Target:  5'- cUCCgcggUGGGuuccgcgugGCGCCUcgGcGCAGCGGCGGc -3'
miRNA:   3'- -GGG----ACCC---------UGCGGAaaC-UGUCGCUGCU- -5'
27447 3' -55.8 NC_005869.1 + 28656 0.67 0.532064
Target:  5'- ---aGGGGCGg---UGGCAGCGGCGGg -3'
miRNA:   3'- gggaCCCUGCggaaACUGUCGCUGCU- -5'
27447 3' -55.8 NC_005869.1 + 10637 0.67 0.489272
Target:  5'- gCCCUGGG-CGCgga-GGgGGCGACGc -3'
miRNA:   3'- -GGGACCCuGCGgaaaCUgUCGCUGCu -5'
27447 3' -55.8 NC_005869.1 + 16179 0.68 0.468485
Target:  5'- gCgCUGGGACGCCUgcuGCAG-GAUGu -3'
miRNA:   3'- -GgGACCCUGCGGAaacUGUCgCUGCu -5'
27447 3' -55.8 NC_005869.1 + 24957 0.69 0.390286
Target:  5'- cCCCUcGaGGACcuCCUggUGGuCAGCGACGAg -3'
miRNA:   3'- -GGGA-C-CCUGc-GGAa-ACU-GUCGCUGCU- -5'
27447 3' -55.8 NC_005869.1 + 13500 0.69 0.390286
Target:  5'- gCCCcGGGGCGCggcUGGUGGCGGCGGg -3'
miRNA:   3'- -GGGaCCCUGCGgaaACUGUCGCUGCU- -5'
27447 3' -55.8 NC_005869.1 + 4911 0.69 0.381125
Target:  5'- gCCggUGGGAcCGUagaUGACAGCGAUGAc -3'
miRNA:   3'- gGG--ACCCU-GCGgaaACUGUCGCUGCU- -5'
27447 3' -55.8 NC_005869.1 + 18880 0.69 0.381125
Target:  5'- aCCUGGGGgGCCUUUGgaacucgccggaGCcGCGGCc- -3'
miRNA:   3'- gGGACCCUgCGGAAAC------------UGuCGCUGcu -5'
27447 3' -55.8 NC_005869.1 + 2623 0.69 0.372109
Target:  5'- aCCgGGGGCGgCUguggcUGACGGUGAaCGAg -3'
miRNA:   3'- gGGaCCCUGCgGAa----ACUGUCGCU-GCU- -5'
27447 3' -55.8 NC_005869.1 + 193 0.7 0.328427
Target:  5'- gCCCUGGGGCGguCCUccgcggGGCggggccgAGCGGCGGa -3'
miRNA:   3'- -GGGACCCUGC--GGAaa----CUG-------UCGCUGCU- -5'
27447 3' -55.8 NC_005869.1 + 15030 0.71 0.30533
Target:  5'- cCCCgGGGAUGCUguuacGCAGCGGCa- -3'
miRNA:   3'- -GGGaCCCUGCGGaaac-UGUCGCUGcu -5'
27447 3' -55.8 NC_005869.1 + 12971 1.01 0.002194
Target:  5'- gCCC-GGGACGCCUUUGACAGCGACGAg -3'
miRNA:   3'- -GGGaCCCUGCGGAAACUGUCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.