miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27447 5' -59.4 NC_005869.1 + 8505 0.66 0.354637
Target:  5'- cCCgCGUGC--CGGccUCCGCGGCCUCg- -3'
miRNA:   3'- -GGaGUACGacGCC--AGGCGUCGGAGga -5'
27447 5' -59.4 NC_005869.1 + 14002 0.66 0.354637
Target:  5'- gCUCAUccagGUUGaUGGUCUGCGugcucGCCUCCa -3'
miRNA:   3'- gGAGUA----CGAC-GCCAGGCGU-----CGGAGGa -5'
27447 5' -59.4 NC_005869.1 + 3758 0.66 0.346156
Target:  5'- gCCUCcgagGCcGUGGcCCGCAGCuguauCUCCa -3'
miRNA:   3'- -GGAGua--CGaCGCCaGGCGUCG-----GAGGa -5'
27447 5' -59.4 NC_005869.1 + 7672 0.67 0.329633
Target:  5'- gCC-CA-GCUGCGGcgCCGCcGCCUgCg -3'
miRNA:   3'- -GGaGUaCGACGCCa-GGCGuCGGAgGa -5'
27447 5' -59.4 NC_005869.1 + 5562 0.67 0.3137
Target:  5'- aCCguuugCgAUGCuUGCGGgcaCCGCGGCC-CCg -3'
miRNA:   3'- -GGa----G-UACG-ACGCCa--GGCGUCGGaGGa -5'
27447 5' -59.4 NC_005869.1 + 11660 0.67 0.3137
Target:  5'- aCCUCAcGCgccGCGGUCCcCGGggaccgaacuCCUCCUc -3'
miRNA:   3'- -GGAGUaCGa--CGCCAGGcGUC----------GGAGGA- -5'
27447 5' -59.4 NC_005869.1 + 9531 0.67 0.297605
Target:  5'- cCUUCGaGCUGCGGcCCcgggaggGCGGCCgcgCCg -3'
miRNA:   3'- -GGAGUaCGACGCCaGG-------CGUCGGa--GGa -5'
27447 5' -59.4 NC_005869.1 + 17918 0.68 0.24925
Target:  5'- cCCUCAUcgGCccccgGCGGUaCCGCcGCCUgCCg -3'
miRNA:   3'- -GGAGUA--CGa----CGCCA-GGCGuCGGA-GGa -5'
27447 5' -59.4 NC_005869.1 + 24464 0.69 0.242806
Target:  5'- gCCUCcgcgGCUGCGccggggGCGGCCUCCUg -3'
miRNA:   3'- -GGAGua--CGACGCcagg--CGUCGGAGGA- -5'
27447 5' -59.4 NC_005869.1 + 17446 0.7 0.196137
Target:  5'- cCCggcgCccGCgGCGGuUCCGguGCCUCCc -3'
miRNA:   3'- -GGa---GuaCGaCGCC-AGGCguCGGAGGa -5'
27447 5' -59.4 NC_005869.1 + 13071 0.7 0.190888
Target:  5'- gCUCugaggagGCUGCGGaCCGCAGCaugaggcggccCUCCUc -3'
miRNA:   3'- gGAGua-----CGACGCCaGGCGUCG-----------GAGGA- -5'
27447 5' -59.4 NC_005869.1 + 380 0.71 0.171109
Target:  5'- cCUUCGcGCUGagaGGUCCGCGGCggCCg -3'
miRNA:   3'- -GGAGUaCGACg--CCAGGCGUCGgaGGa -5'
27447 5' -59.4 NC_005869.1 + 23210 0.74 0.094615
Target:  5'- uUCUCG-GC-GCGGUCCuGCGGCCUCUUc -3'
miRNA:   3'- -GGAGUaCGaCGCCAGG-CGUCGGAGGA- -5'
27447 5' -59.4 NC_005869.1 + 13005 1.08 0.00022
Target:  5'- gCCUCAUGCUGCGGUCCGCAGCCUCCUc -3'
miRNA:   3'- -GGAGUACGACGCCAGGCGUCGGAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.