miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27448 3' -62.9 NC_005869.1 + 13432 1.07 0.000128
Target:  5'- cAGCUUCUCCCGCCGCCACCAGCCGCGc -3'
miRNA:   3'- -UCGAAGAGGGCGGCGGUGGUCGGCGC- -5'
27448 3' -62.9 NC_005869.1 + 24074 0.77 0.032804
Target:  5'- cGGCcccgaccCUUCCGCCGCCACCAccGCCGCc -3'
miRNA:   3'- -UCGaa-----GAGGGCGGCGGUGGU--CGGCGc -5'
27448 3' -62.9 NC_005869.1 + 24482 0.76 0.036851
Target:  5'- -uCUUCUCCC-CCGCCACgCcGCCGCGg -3'
miRNA:   3'- ucGAAGAGGGcGGCGGUG-GuCGGCGC- -5'
27448 3' -62.9 NC_005869.1 + 15597 0.75 0.045143
Target:  5'- cGCUUC-CaCCGCCGCCACCAcauCCGCc -3'
miRNA:   3'- uCGAAGaG-GGCGGCGGUGGUc--GGCGc -5'
27448 3' -62.9 NC_005869.1 + 26842 0.75 0.052155
Target:  5'- gGGCUgguUCUgCUGCCGCCGCU-GCUGCGg -3'
miRNA:   3'- -UCGA---AGAgGGCGGCGGUGGuCGGCGC- -5'
27448 3' -62.9 NC_005869.1 + 8594 0.74 0.05637
Target:  5'- cAGCUg--CCCGCCugagaccggccgccGCCGCCgaGGCCGCGg -3'
miRNA:   3'- -UCGAagaGGGCGG--------------CGGUGG--UCGGCGC- -5'
27448 3' -62.9 NC_005869.1 + 7851 0.74 0.060048
Target:  5'- uGC-UCUgCCCGCagaagcgCGCCAUCGGCCGCGc -3'
miRNA:   3'- uCGaAGA-GGGCG-------GCGGUGGUCGGCGC- -5'
27448 3' -62.9 NC_005869.1 + 13309 0.74 0.06022
Target:  5'- aGGCgccgCcgCCgGCCGCCGCC-GCCGCGc -3'
miRNA:   3'- -UCGaa--Ga-GGgCGGCGGUGGuCGGCGC- -5'
27448 3' -62.9 NC_005869.1 + 32407 0.72 0.084792
Target:  5'- uAGCc-CUCCCGCaccuucacCGCUGCCAGCUGCa -3'
miRNA:   3'- -UCGaaGAGGGCG--------GCGGUGGUCGGCGc -5'
27448 3' -62.9 NC_005869.1 + 13214 0.72 0.089725
Target:  5'- cGCUggggCUCgCGCCGCUccagccugGCCAGCgGCGc -3'
miRNA:   3'- uCGAa---GAGgGCGGCGG--------UGGUCGgCGC- -5'
27448 3' -62.9 NC_005869.1 + 10918 0.72 0.089725
Target:  5'- cAGCUgcaUCUCCCGCC-CCGCgCGGaaCCGCa -3'
miRNA:   3'- -UCGA---AGAGGGCGGcGGUG-GUC--GGCGc -5'
27448 3' -62.9 NC_005869.1 + 24196 0.71 0.094931
Target:  5'- cGGUgggCUCCUGCUGCCGCU-GCUGCa -3'
miRNA:   3'- -UCGaa-GAGGGCGGCGGUGGuCGGCGc -5'
27448 3' -62.9 NC_005869.1 + 18791 0.71 0.097639
Target:  5'- cGGCg--UCCgGCCGCgGcuCCGGCCGCGg -3'
miRNA:   3'- -UCGaagAGGgCGGCGgU--GGUCGGCGC- -5'
27448 3' -62.9 NC_005869.1 + 16232 0.71 0.100421
Target:  5'- gGGCggg-CCCGCCGCUGCC-GCCGgGc -3'
miRNA:   3'- -UCGaagaGGGCGGCGGUGGuCGGCgC- -5'
27448 3' -62.9 NC_005869.1 + 10298 0.71 0.103277
Target:  5'- uGCUcaugaaccUCUCCCcCCGCCaACCGGCCaCGg -3'
miRNA:   3'- uCGA--------AGAGGGcGGCGG-UGGUCGGcGC- -5'
27448 3' -62.9 NC_005869.1 + 22130 0.7 0.10922
Target:  5'- aGGCgggCUCCCGgCGaCgGCCAGCCaGUGg -3'
miRNA:   3'- -UCGaa-GAGGGCgGC-GgUGGUCGG-CGC- -5'
27448 3' -62.9 NC_005869.1 + 7669 0.7 0.10922
Target:  5'- cAGCUgcggCgCCGCCGCCugCgcgGGCCGCc -3'
miRNA:   3'- -UCGAaga-G-GGCGGCGGugG---UCGGCGc -5'
27448 3' -62.9 NC_005869.1 + 21117 0.7 0.10922
Target:  5'- uGCUUCagCCGCgugaaGCU-CCAGCCGCGg -3'
miRNA:   3'- uCGAAGagGGCGg----CGGuGGUCGGCGC- -5'
27448 3' -62.9 NC_005869.1 + 18623 0.7 0.110446
Target:  5'- gAGCUguaUCCCGacaaggccgggauccCCGCCACCuuggAGCUGCGu -3'
miRNA:   3'- -UCGAag-AGGGC---------------GGCGGUGG----UCGGCGC- -5'
27448 3' -62.9 NC_005869.1 + 17904 0.7 0.11231
Target:  5'- cGGCggua-CCGCCGCCugCcGCCGCu -3'
miRNA:   3'- -UCGaagagGGCGGCGGugGuCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.