miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27448 5' -53.2 NC_005869.1 + 32204 0.66 0.733135
Target:  5'- cCUCaGccGAUGGaacagGAGGAGGAuGGAGGAg -3'
miRNA:   3'- -GAG-CuuCUGCUg----CUCCUCCU-CCUUCU- -5'
27448 5' -53.2 NC_005869.1 + 8195 0.66 0.710983
Target:  5'- -gUGAAGAgcaGGCgGAGGGGGAagGGGAGGc -3'
miRNA:   3'- gaGCUUCUg--CUG-CUCCUCCU--CCUUCU- -5'
27448 5' -53.2 NC_005869.1 + 3782 0.66 0.699775
Target:  5'- -cUGGAG-CGAacaccauggaaGAGGAGGAGGAugAGAu -3'
miRNA:   3'- gaGCUUCuGCUg----------CUCCUCCUCCU--UCU- -5'
27448 5' -53.2 NC_005869.1 + 24538 0.66 0.688496
Target:  5'- -gCGgcGGCGugGcGGGGGAG-AAGAg -3'
miRNA:   3'- gaGCuuCUGCugCuCCUCCUCcUUCU- -5'
27448 5' -53.2 NC_005869.1 + 6862 0.67 0.677158
Target:  5'- --gGAGGGCG-CGAGGAGGuucGGccGAg -3'
miRNA:   3'- gagCUUCUGCuGCUCCUCCu--CCuuCU- -5'
27448 5' -53.2 NC_005869.1 + 6696 0.67 0.665774
Target:  5'- gUCGAAGGgGuuGAGGGGuuggccggcGGGGAAGGg -3'
miRNA:   3'- gAGCUUCUgCugCUCCUC---------CUCCUUCU- -5'
27448 5' -53.2 NC_005869.1 + 14193 0.67 0.665774
Target:  5'- -gCGGugGGGCGGCagcagGGGGucaAGGAGGAGGAc -3'
miRNA:   3'- gaGCU--UCUGCUG-----CUCC---UCCUCCUUCU- -5'
27448 5' -53.2 NC_005869.1 + 3987 0.67 0.665774
Target:  5'- -cUGAcgGGACuGugGggggaagaAGGGGGAGGAGGAa -3'
miRNA:   3'- gaGCU--UCUG-CugC--------UCCUCCUCCUUCU- -5'
27448 5' -53.2 NC_005869.1 + 6926 0.68 0.620015
Target:  5'- gCUUGAAGAUGGCGuGGGAGuuGGAGc- -3'
miRNA:   3'- -GAGCUUCUGCUGC-UCCUCcuCCUUcu -5'
27448 5' -53.2 NC_005869.1 + 6604 0.68 0.608576
Target:  5'- -gUGAAGAgGGCGGGcAGGAGGucGGg -3'
miRNA:   3'- gaGCUUCUgCUGCUCcUCCUCCuuCU- -5'
27448 5' -53.2 NC_005869.1 + 688 0.68 0.608576
Target:  5'- gCUgGAcaguGugGACGAGGuGGAGGu-GAu -3'
miRNA:   3'- -GAgCUu---CugCUGCUCCuCCUCCuuCU- -5'
27448 5' -53.2 NC_005869.1 + 8362 0.68 0.585775
Target:  5'- gUCgGggGGCgGGCGcAGGAGGugcagcuGGAAGAg -3'
miRNA:   3'- gAG-CuuCUG-CUGC-UCCUCCu------CCUUCU- -5'
27448 5' -53.2 NC_005869.1 + 3751 0.69 0.55191
Target:  5'- aUUGuGGugGACGAGGAGGuGGc--- -3'
miRNA:   3'- gAGCuUCugCUGCUCCUCCuCCuucu -5'
27448 5' -53.2 NC_005869.1 + 23843 0.69 0.507752
Target:  5'- -gCGgcGACGGCGcGGcccgcgAGGAGGAAGGn -3'
miRNA:   3'- gaGCuuCUGCUGCuCC------UCCUCCUUCU- -5'
27448 5' -53.2 NC_005869.1 + 25605 0.69 0.507752
Target:  5'- gCUCGAGGACGA--AGGAGc-GGAAGGc -3'
miRNA:   3'- -GAGCUUCUGCUgcUCCUCcuCCUUCU- -5'
27448 5' -53.2 NC_005869.1 + 4834 0.7 0.46516
Target:  5'- -aUGAAGAaaacagucucCGGCGGGGGGGAGaGGAGu -3'
miRNA:   3'- gaGCUUCU----------GCUGCUCCUCCUC-CUUCu -5'
27448 5' -53.2 NC_005869.1 + 13119 0.7 0.454802
Target:  5'- -gCGAGGGCGGCuccucggucaGGGGcaggggggugaAGGAGGAGGAg -3'
miRNA:   3'- gaGCUUCUGCUG----------CUCC-----------UCCUCCUUCU- -5'
27448 5' -53.2 NC_005869.1 + 29384 0.71 0.44457
Target:  5'- uUUGGAGAcCGGCGGcGAGG-GGAAGAg -3'
miRNA:   3'- gAGCUUCU-GCUGCUcCUCCuCCUUCU- -5'
27448 5' -53.2 NC_005869.1 + 4473 0.71 0.435473
Target:  5'- gUgGAGGACGACGAGGAcGGcguagccggugcagcGGggGAa -3'
miRNA:   3'- gAgCUUCUGCUGCUCCU-CCu--------------CCuuCU- -5'
27448 5' -53.2 NC_005869.1 + 25971 0.71 0.434469
Target:  5'- cCUCGGAGACaaaGuGGcGGAGGAAGGc -3'
miRNA:   3'- -GAGCUUCUGcugCuCCuCCUCCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.