miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27449 3' -57.7 NC_005869.1 + 410 0.66 0.454491
Target:  5'- -aCCCCGCUcagGUGAGUGGUgUCACCg- -3'
miRNA:   3'- cgGGGGUGGa--UGCUCACCA-AGUGGga -5'
27449 3' -57.7 NC_005869.1 + 24205 0.66 0.454491
Target:  5'- uCCUCCGCCUccaGCGAGUGcUUCGuCUCg -3'
miRNA:   3'- cGGGGGUGGA---UGCUCACcAAGU-GGGa -5'
27449 3' -57.7 NC_005869.1 + 22846 0.66 0.452482
Target:  5'- cGCCCCCGaugugaugcuggcCCUGCagcugaccaaacaGAuGUGGgcCGCCCUg -3'
miRNA:   3'- -CGGGGGU-------------GGAUG-------------CU-CACCaaGUGGGA- -5'
27449 3' -57.7 NC_005869.1 + 25098 0.67 0.405803
Target:  5'- uUCCUCACCUcccGCGAGaUGGUgCGCCg- -3'
miRNA:   3'- cGGGGGUGGA---UGCUC-ACCAaGUGGga -5'
27449 3' -57.7 NC_005869.1 + 18886 0.67 0.37821
Target:  5'- aCCCCCACCUGgGGGgccuuUGGaacUCGCCg- -3'
miRNA:   3'- cGGGGGUGGAUgCUC-----ACCa--AGUGGga -5'
27449 3' -57.7 NC_005869.1 + 25979 0.67 0.37821
Target:  5'- cGCCCCC-CCa--GGGUGGa--GCCCUc -3'
miRNA:   3'- -CGGGGGuGGaugCUCACCaagUGGGA- -5'
27449 3' -57.7 NC_005869.1 + 13688 0.67 0.368413
Target:  5'- cGCCUCCGCCguccUACGAgaguGUGGUggggucuUCGCUCa -3'
miRNA:   3'- -CGGGGGUGG----AUGCU----CACCA-------AGUGGGa -5'
27449 3' -57.7 NC_005869.1 + 7660 0.68 0.360528
Target:  5'- cGCCgCCGCCUGCGc--GGgcCGCCCc -3'
miRNA:   3'- -CGGgGGUGGAUGCucaCCaaGUGGGa -5'
27449 3' -57.7 NC_005869.1 + 20762 0.68 0.326925
Target:  5'- aCCUaCACCUACGAGUGGUcCuuCCg -3'
miRNA:   3'- cGGGgGUGGAUGCUCACCAaGugGGa -5'
27449 3' -57.7 NC_005869.1 + 28617 0.69 0.303283
Target:  5'- cGCCCCuCACCUAU--GUGGg--ACCCUg -3'
miRNA:   3'- -CGGGG-GUGGAUGcuCACCaagUGGGA- -5'
27449 3' -57.7 NC_005869.1 + 10234 0.7 0.266844
Target:  5'- -gCCCCACCUGCucGUGGgcuaccagCACCUg -3'
miRNA:   3'- cgGGGGUGGAUGcuCACCaa------GUGGGa -5'
27449 3' -57.7 NC_005869.1 + 14611 0.7 0.266844
Target:  5'- uCCCCCGCCU-CG-G-GGUccUCGCCCa -3'
miRNA:   3'- cGGGGGUGGAuGCuCaCCA--AGUGGGa -5'
27449 3' -57.7 NC_005869.1 + 9969 0.7 0.259996
Target:  5'- uGCgCCC-CCUGCGGGgcuacGGUcgCACCCa -3'
miRNA:   3'- -CGgGGGuGGAUGCUCa----CCAa-GUGGGa -5'
27449 3' -57.7 NC_005869.1 + 8350 0.71 0.227887
Target:  5'- cGCCgggCCCACCUuCGuccaGGUGG-UCACCCg -3'
miRNA:   3'- -CGG---GGGUGGAuGC----UCACCaAGUGGGa -5'
27449 3' -57.7 NC_005869.1 + 24812 0.71 0.227887
Target:  5'- aCCCCCGCCUgGCG-GUGGUcaagcagugcaUCGCCg- -3'
miRNA:   3'- cGGGGGUGGA-UGCuCACCA-----------AGUGGga -5'
27449 3' -57.7 NC_005869.1 + 17412 0.72 0.193851
Target:  5'- cCCCCCACCccGCGcgccccGGUGGUUCcggugGCCCg -3'
miRNA:   3'- cGGGGGUGGa-UGC------UCACCAAG-----UGGGa -5'
27449 3' -57.7 NC_005869.1 + 5869 0.72 0.183534
Target:  5'- uGCCUUCAUCUcCGAGUGGgcccUCAUCCUc -3'
miRNA:   3'- -CGGGGGUGGAuGCUCACCa---AGUGGGA- -5'
27449 3' -57.7 NC_005869.1 + 14090 1.1 0.000284
Target:  5'- uGCCCCCACCUACGAGUGGUUCACCCUg -3'
miRNA:   3'- -CGGGGGUGGAUGCUCACCAAGUGGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.