miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27449 5' -54.3 NC_005869.1 + 25689 0.66 0.684621
Target:  5'- aGAGGG--GCgg--CGGGCAcUCGCGGu -3'
miRNA:   3'- gCUCCCguUGaagaGCCUGU-AGCGCC- -5'
27449 5' -54.3 NC_005869.1 + 5550 0.66 0.673394
Target:  5'- uGGGGGCGagcaggACcgUCUCGGagcuguggGCGUCGCu- -3'
miRNA:   3'- gCUCCCGU------UGa-AGAGCC--------UGUAGCGcc -5'
27449 5' -54.3 NC_005869.1 + 19337 0.66 0.673394
Target:  5'- gGuGGGCGACaaccgcgUgUUGGACAUgGCGa -3'
miRNA:   3'- gCuCCCGUUGa------AgAGCCUGUAgCGCc -5'
27449 5' -54.3 NC_005869.1 + 8343 0.66 0.662127
Target:  5'- gGGGGGUAGCcugcaGGAgGUCGgGGg -3'
miRNA:   3'- gCUCCCGUUGaagagCCUgUAGCgCC- -5'
27449 5' -54.3 NC_005869.1 + 6205 0.67 0.628193
Target:  5'- cCGcGGGCGAUggCuUCGGugGU-GCGGg -3'
miRNA:   3'- -GCuCCCGUUGaaG-AGCCugUAgCGCC- -5'
27449 5' -54.3 NC_005869.1 + 17633 0.67 0.616874
Target:  5'- cCGAGGGCGggggaccgccGCUg--CGGGCGg-GCGGc -3'
miRNA:   3'- -GCUCCCGU----------UGAagaGCCUGUagCGCC- -5'
27449 5' -54.3 NC_005869.1 + 67 0.67 0.57184
Target:  5'- uGGGGGCGGCggg-CGGugAUUgGUGGa -3'
miRNA:   3'- gCUCCCGUUGaagaGCCugUAG-CGCC- -5'
27449 5' -54.3 NC_005869.1 + 6883 0.67 0.57184
Target:  5'- cCGAGGuGCGGCgcCUgGGGCcggcuggCGCGGu -3'
miRNA:   3'- -GCUCC-CGUUGaaGAgCCUGua-----GCGCC- -5'
27449 5' -54.3 NC_005869.1 + 34028 0.67 0.57184
Target:  5'- uGGGGGCGGCggg-CGGugAUUgGUGGa -3'
miRNA:   3'- gCUCCCGUUGaagaGCCugUAG-CGCC- -5'
27449 5' -54.3 NC_005869.1 + 517 0.67 0.57184
Target:  5'- aGAGuaGUGAC-UCUCGGGCGcugCGCGGa -3'
miRNA:   3'- gCUCc-CGUUGaAGAGCCUGUa--GCGCC- -5'
27449 5' -54.3 NC_005869.1 + 18798 0.68 0.549599
Target:  5'- gCGGGGGCGGCggCggcagCGGAgGagGUGGu -3'
miRNA:   3'- -GCUCCCGUUGaaGa----GCCUgUagCGCC- -5'
27449 5' -54.3 NC_005869.1 + 14985 0.68 0.516772
Target:  5'- gCGAGGGCAcgUUCUCgcugauggaGGugAUgGUGGa -3'
miRNA:   3'- -GCUCCCGUugAAGAG---------CCugUAgCGCC- -5'
27449 5' -54.3 NC_005869.1 + 4600 0.69 0.453725
Target:  5'- aCGAuGGCGAUgggUCcgCGGGCGgcggCGCGGg -3'
miRNA:   3'- -GCUcCCGUUGa--AGa-GCCUGUa---GCGCC- -5'
27449 5' -54.3 NC_005869.1 + 8749 0.7 0.440615
Target:  5'- --uGGcGCAGgaUCUCGGACAcguccccgcuguuuUCGCGGu -3'
miRNA:   3'- gcuCC-CGUUgaAGAGCCUGU--------------AGCGCC- -5'
27449 5' -54.3 NC_005869.1 + 10650 0.71 0.395091
Target:  5'- aGGGGGCGACgcgcUCUCGGucgcccucgcCGUCGCu- -3'
miRNA:   3'- gCUCCCGUUGa---AGAGCCu---------GUAGCGcc -5'
27449 5' -54.3 NC_005869.1 + 8588 0.71 0.385804
Target:  5'- --cGGGCAGCggga-GGugGUCGCGGc -3'
miRNA:   3'- gcuCCCGUUGaagagCCugUAGCGCC- -5'
27449 5' -54.3 NC_005869.1 + 13119 0.73 0.278701
Target:  5'- gCGAGGGCGGCUcCUCGGuCAgggGCaGGg -3'
miRNA:   3'- -GCUCCCGUUGAaGAGCCuGUag-CG-CC- -5'
27449 5' -54.3 NC_005869.1 + 14125 1.11 0.000632
Target:  5'- cCGAGGGCAACUUCUCGGACAUCGCGGu -3'
miRNA:   3'- -GCUCCCGUUGAAGAGCCUGUAGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.